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MaeN: Difference between revisions

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* '''Description:''' Na+/malate symporter <br/><br/>
{{#bank: MaeN}}


{| align="right" border="1" cellpadding="2"
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''maeN''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yufR ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|style="background:#ABCDEF;" align="center"| '''Product''' || Na+/malate symporter
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|style="background:#ABCDEF;" align="center"|'''Function''' || malate uptake
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31580 maeN]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=maeN maeN]'''
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 8.411 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1344 bp, 448 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nupQ]]'', ''[[yufS]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU31580 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU31580 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU31580 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:maeN_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=maeN_3244770_3246116_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:maeN_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31580]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[transporters/ other]]}},
{{SubtiWiki category|[[utilization of specific carbon sources]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[MalR regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU31580
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12353]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' sodium:citrate (SCF) symporter family (according to Swiss-Prot) 2-hydroxycarboxylate transporter family
* '''Paralogous protein(s):''' [[CimH]]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/O05256 O05256]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU31580]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[maeN]]'' {{PubMed|21815947}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=maeN_3244770_3246116_1 maeN] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:''' induced by malate ([[MalR]])
* '''Regulatory mechanism:''' [[MalR]]: transcription activation
* '''Additional information:'''
** the mRNA is substantially stabilized upon depletion of [[Rny|RNase Y]] {{PubMed|21815947}}
=Biological materials =
* '''Mutant:'''
** 1A642 (''maeN''::Tn917, erm) (available from the [http://www.bgsc.org/ BGSC] or in [[Jörg Stülke]]'s lab)
** 1A642 ( ''maeN''::''erm''), {{PubMed|3015878}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A642&Search=1A642 BGSC]
** GP1449 (''erm''), available in [[Stülke]] lab
* '''Expression vector:'''
** expression of native ''maeN'' in ''B. subtilis'': pGP1951 (in [[pBQ200]]), available in [[Stülke]] lab     
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews==
<pubmed>16339740 </pubmed>
==Original publications==
<pubmed>19087206,12949159,,12949159, 21815947</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:38, 2 April 2014