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| * '''Description:''' 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / 2-oxoglutarate decarboxylase <br/><br/>
| | {{#bank: MenD}} |
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| {| align="right" border="1" cellpadding="2"
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| |style="background:#ABCDEF;" align="center"|'''Gene name'''
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| |''menD''
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| |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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| |style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
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| |style="background:#ABCDEF;" align="center"| '''Product''' || 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate<br/> synthase / 2-oxoglutarate decarboxylase
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| |style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of menaquinone
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| |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30820 menD]
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| |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=menD menD]'''
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| |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 63 kDa, 5.655
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| |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1740 bp, 580 aa
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| |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytxM]]'', ''[[menF]]''
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| |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU30820 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU30820 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU30820 DNA_with_flanks]
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| |colspan="2" | '''Genetic context''' <br/> [[Image:menD_context.gif]]
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| <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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| |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=menD_3150563_3152305_-1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:menD_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30820]]
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| |}
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| __TOC__
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| <br/><br/><br/><br/>
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| <br/><br/><br/><br/><br/><br/>
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| = [[Categories]] containing this gene/protein =
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| {{SubtiWiki category|[[biosynthesis of cofactors]]}},
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| {{SubtiWiki category|[[essential genes]]}}
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| = This gene is a member of the following [[regulons]] =
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| =The gene=
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| === Basic information ===
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| * '''Locus tag:''' BSU30820
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| ===Phenotypes of a mutant ===
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| essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
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| === Database entries ===
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| * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/menBEC.html]
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| * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10683]
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| === Additional information===
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| =The protein=
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| === Basic information/ Evolution ===
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| * '''Catalyzed reaction/ biological activity:''' Isochorismate + 2-oxoglutarate = 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate + CO<sub>2</sub> (according to Swiss-Prot)
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| * '''Protein family:''' MenD subfamily (according to Swiss-Prot)
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| * '''Paralogous protein(s):'''
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| === Extended information on the protein ===
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| * '''Kinetic information:'''
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| * '''Domains:'''
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| * '''Modification:'''
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| * '''Cofactor(s):''' thiamine pyrophosphate, divalent metal ion such as Mn(2+)) {{PubMed|20600129}}
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| * '''Effectors of protein activity:'''
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| * '''[[SubtInteract|Interactions]]:'''
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| * '''[[Localization]]:'''
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| === Database entries ===
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| * '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=2X7J 2X7J] {{PubMed|20600129}}
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| * '''UniProt:''' [http://www.uniprot.org/uniprot/P23970 P23970]
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| * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU30820]
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| * '''E.C. number:''' [http://www.expasy.org/enzyme/2.2.1.9 2.2.1.9]
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| === Additional information===
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| =Expression and regulation=
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| * '''Operon:''' ''[[menF]]-[[menD]]-[[ytxM]]-[[menB]]-[[menE]]-[[menC]]'' {{PubMed|9387221,1629163,8550504}}
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| * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=menD_3150563_3152305_-1 menD] {{PubMed|22383849}}
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| * '''Sigma factor:''' [[SigA]]: {{PubMed|8550504}}
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| * '''Regulation:'''
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| * '''Regulatory mechanism:'''
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| * '''Additional information:'''
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| =Biological materials =
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| * '''Mutant:'''
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| * '''Expression vector:'''
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| * '''lacZ fusion:'''
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| * '''GFP fusion:'''
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| * '''two-hybrid system:'''
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| * '''Antibody:'''
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| =Labs working on this gene/protein=
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| =Your additional remarks=
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| =References=
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| <pubmed>9387221,1629163,8550504 20600129 </pubmed>
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| [[Category:Protein-coding genes]]
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