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Csn: Difference between revisions

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* '''Description:''' chitosanase <br/><br/>
{{#bank: Csn}}


{| align="right" border="1" cellpadding="2"
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''csn''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || chitosanase
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|style="background:#ABCDEF;" align="center"|'''Function''' || chitin degradation
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26890 csn]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 8.892 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 831 bp, 277 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yraM]]'', ''[[yraL]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU26890 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU26890 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU26890 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:csn_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=csn_2747984_2748817_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:csn_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26890]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[utilization of specific carbon sources]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[AbrB regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU26890
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11923]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' Endohydrolysis of beta-(1->4)-linkages between D-glucosamine residues in a partly acetylated chitosan (according to Swiss-Prot)
* '''Protein family:''' glycosyl hydrolase 46 family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
** extracellular (signal peptide), major constituent of the secretome [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed]
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/O07921 O07921]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU26890]
* '''E.C. number:''' [http://www.expasy.org/enzyme/3.2.1.132 3.2.1.132]
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=csn_2747984_2748817_-1 csn] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
* '''Regulatory mechanism:'''
** [[AbrB]]: transcription repression {{PubMed|20817675}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>11065371,18957862, 22031025 20817675 12401130 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:20, 2 April 2014