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SpoIIP: Difference between revisions

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* '''Description:''' cell wall hydrolase with both amidase and endopeptidase activities, required for dissolution of the septal cell wall <br/><br/>
{{#bank: SpoIIP}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''spoIIP''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || cell wall hydrolase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || dissolution of the septal cell wall
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU25530 spoIIP]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SpoIIP SpoIIP]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 44 kDa, 6.852 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1203 bp, 401 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqxA]]'', ''[[gpr]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU25530 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU25530 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU25530 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:spoIIP_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIP_2633237_2634442_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoIIP_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU25530]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[cell wall/ other]]}},
{{SubtiWiki category|[[sporulation proteins]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigE regulon]]}},
{{SubtiWiki regulon|[[SigF regulon]]}},
[[Efp-dependent proteins]]
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU25530
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoIIP-yqxA.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10439]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
** removes the stem peptides from the cell wall and cleaves the cross-links between them {{PubMed|20159959}}
** required for proper localization of [[SpoIIQ]] (together with [[SpoIID]]) {{PubMed|23834622}}
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:''' activity is stimulated by interaction with [[SpoIID]] {{PubMed|20159959}}
* '''[[SubtInteract|Interactions]]:'''
** [[SpoIID]]-[[SpoIIP]] {{PubMed|20159959}}
** [[SpoIIP]]-[[SpoIIM]]  {{PubMed|17376078}}
* '''[[Localization]]:''' cell membrane {{PubMed|20159959}}
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P37968 P37968]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU25530]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[spoIIP]]-[[yqxA]]'' {{PubMed|7836306}}, ''[[gpr]]-[[spoIIP]]'' {{PubMed|16497325}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIP_2633237_2634442_-1 spoIIP] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
** ''[[spoIIP]]'': [[SigE]] {{PubMed|7836306}}
** ''[[gpr]]'':[[SigF]] {{PubMed|16497325}}
* '''Regulation:''' expressed early during sporulation ([[SigE]],[[SigF]]) {{PubMed|16497325,7836306}}
* '''Regulatory mechanism:'''
* '''Additional information:'''
** [[translation]] is likely to require [[Efp]] due to the presence of several consecutive proline residues {{PubMed|23239624,23239623}}
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
== Reviews ==
<pubmed> 23944268 </pubmed>
== Original publications ==
<pubmed>16497325,17376078,15882622,11886548,15752199 , 20159959 20382772 23834622 23859254 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:16, 2 April 2014