XynC: Difference between revisions
No edit summary |
No edit summary |
||
| Line 52: | Line 52: | ||
=== Database entries === | === Database entries === | ||
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU18150&redirect=T BSU18150] | |||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
| Line 90: | Line 91: | ||
=== Database entries === | === Database entries === | ||
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU18150&redirect=T BSU18150] | |||
* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=3GTN 3GTN] {{PubMed|19407387,21256135}} | * '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=3GTN 3GTN] {{PubMed|19407387,21256135}} | ||
Latest revision as of 13:51, 2 April 2014
- Description: endo-xylanase, preference for methylglucurono-xylan
| Gene name | xynC |
| Synonyms | ynfF |
| Essential | no |
| Product | endo-xylanase |
| Function | xylan degradation |
| Gene expression levels in SubtiExpress: xynC | |
| MW, pI | 47 kDa, 9.078 |
| Gene length, protein length | 1266 bp, 422 aa |
| Immediate neighbours | ynfE, xynD |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU18150
Phenotypes of a mutant
Database entries
- BsubCyc: BSU18150
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Endohydrolysis of (1->4)-beta-D-xylosyl links in some glucuronoarabinoxylans (according to Swiss-Prot)
- Protein family: glycosyl hydrolase 30 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- extracellular (signal peptide) PubMed
Database entries
- BsubCyc: BSU18150
- UniProt: Q45070
- KEGG entry: [2]
- E.C. number: 3.2.1.136
Additional information
Expression and regulation
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
<pubmed>20735481 </pubmed>
Original publications
<pubmed>19407387, 18957862, 17028274 20817675,21256135 24271172 </pubmed>