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SpoVFB: Difference between revisions

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* '''Description:''' dipicolinate synthase (subunit B) <br/><br/>
{{#bank: SpoVFB}}


{| align="right" border="1" cellpadding="2"
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''spoVFB''
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''dpaB ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|style="background:#ABCDEF;" align="center"| '''Product''' || dipicolinate synthase (subunit B)
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|style="background:#ABCDEF;" align="center"|'''Function''' || dipicolic acid production
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16740 spoVFB]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=spoVFB spoVFB]'''
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 6.148 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 600 bp, 200 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[spoVFA]]'', ''[[asd]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16740 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16740 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16740 DNA_with_flanks]
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|colspan="2" | '''Genetic context''' <br/> [[Image:spoVFB_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoVFB_1745263_1745865_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoVFB_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16740]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[miscellaneous metabolic pathways]]}},
{{SubtiWiki category|[[sporulation proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigK regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU16740
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoVFAB-asd-dapG-dapA.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10782]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/Q04810 Q04810]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU16740]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[spoVFA]]-[[spoVFB]]-[[asd]]-[[dapG]]-[[dapA]]'' {{PubMed|8098035}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoVFB_1745263_1745865_1 spoVFB] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigK]] {{PubMed|15699190,8098035}}
* '''Regulation:'''
** expressed late during sporulation in the mother cell ([[SigK]]) {{PubMed|15699190,8098035}}
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>8345520,8098035 ,15699190 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 13:46, 2 April 2014