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PolC: Difference between revisions

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* '''Description:''' DNA polymerase III (alpha subunit), part of the [[replisome]] <br/><br/>
{{#bank: PolC}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''polC''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''mutI, dnaF, dnaP ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || DNA polymerase III (alpha subunit)
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || [[DNA replication]]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16580 polC]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=PolC PolC]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 162 kDa, 5.135 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 4311 bp, 1437 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[proS]]'', ''[[ylxS]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16580 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16580 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16580 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:polC_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=polC_1727133_1731446_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:polC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16580]]
|-
|}
__TOC__
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<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[DNA replication]]}},
{{SubtiWiki category|[[essential genes]]}}
= This gene is a member of the following [[regulons]] =
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU16580
===Phenotypes of a mutant ===
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
=== Database entries ===
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10263]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
** Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1) (according to Swiss-Prot)
** required for bacteriophage SPP1 replication {{PubMed|23268446}}
* '''Protein family:''' PolC subfamily (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** part of the [[replisome]]: [[PolC]]-[[HolA]]-[[HolB]]-[[DnaX]]-[[DnaN]]-[[DnaG]]-[[DnaC]]-[[DnaI]]-[[DnaD]]-[[SsbA]]-[[DnaE]]-[[PriA]]-[[DnaB]] {{PubMed|20122408}}
** [[DnaE]]-[[PolC]]  {{PubMed|23563155}}
* '''[[Localization]]:'''
** forms foci {{PubMed|21958350}}
** cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''Structure:'''
** [http://www.pdb.org/pdb/explore/explore.do?structureId=3f2b 3F2B] (from ''Geobacillus kaustophilus'', 71% identity) {{PubMed|19106298}}
* '''UniProt:''' [http://www.uniprot.org/uniprot/P13267 P13267]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU16580]
* '''E.C. number:''' [http://www.expasy.org/enzyme/2.7.7.7 2.7.7.7]
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=polC_1727133_1731446_1 polC] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
== Reviews ==
<pubmed> 19106294</pubmed>
== Original publications ==
<pubmed>15186423, 20122408,11721055 23563155 23268446,21740522,21958350 24062730 24106089 19106298</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 13:45, 2 April 2014