Jump to content

YeeK: Difference between revisions

From SubtiWiki
No edit summary
No edit summary
Line 1: Line 1:
* '''Description:''' spore coat protein <br/><br/>
* '''Description:''' inner spore coat protein <br/><br/>
{| align="right" border="1" cellpadding="2"  
{| align="right" border="1" cellpadding="2"  
|-
|-
Line 11: Line 11:
|style="background:#ABCDEF;" align="center"| '''Product''' || spore coat protein  
|style="background:#ABCDEF;" align="center"| '''Product''' || spore coat protein  
|-
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|style="background:#ABCDEF;" align="center"|'''Function''' || protection of the spore
|-
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06850 yeeK]
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06850 yeeK]
Line 34: Line 34:
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/>
<br/><br/>


Line 44: Line 40:


= This gene is a member of the following [[regulons]] =
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigK regulon]]}}
{{SubtiWiki regulon|[[SigK regulon]]}},
{{SubtiWiki regulon|[[GerE regulon]]}}


=The gene=
=The gene=
Line 91: Line 88:
* '''[[Localization]]:'''
* '''[[Localization]]:'''
** inner spore coat  {{PubMed|19933362}},  assembles into the spore integument [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
** inner spore coat  {{PubMed|19933362}},  assembles into the spore integument [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
** localization depends on [[CotE]]  {{PubMed|22171814}}


=== Database entries ===
=== Database entries ===
Line 112: Line 110:
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yeeK_753265_753702_1 yeeK] {{PubMed|22383849}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yeeK_753265_753702_1 yeeK] {{PubMed|22383849}}


* '''Sigma factor:''' [[SigK]] {{PubMed|15699190,19060142}}
* '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190,19060142}}


* '''Regulation:'''  
* '''Regulation:'''  
** expression starts 5 hrs after the onset of sporulation [[GerE]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
** expression starts 5 hrs after the onset of [[sporulation]] ([[SigK]], [[GerE]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]


* '''Regulatory mechanism:'''  
* '''Regulatory mechanism:'''  
Line 125: Line 123:


* '''Mutant:'''
* '''Mutant:'''
** 1S125 ( ''yeeK''::''erm''), {{PubMed|16751597}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1S125&Search=1S125 BGSC]
** 1S125 ( ''yeeK''::''erm''), {{PubMed|16751597}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1S125&Search=1S125 BGSC]
** 1S125 ( ''yeeK''::''erm''), {{PubMed|16751597}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1S125&Search=1S125 BGSC]


Line 144: Line 141:
=References=
=References=


<pubmed>10714992, 19933362,19060142, </pubmed>
<pubmed>10714992, 19933362,19060142, 22171814</pubmed>


[[Category:Protein-coding genes]]
[[Category:Protein-coding genes]]

Revision as of 17:04, 13 August 2013

  • Description: inner spore coat protein

Gene name yeeK
Synonyms
Essential no
Product spore coat protein
Function protection of the spore
Gene expression levels in SubtiExpress: yeeK
MW, pI 15 kDa, 6.852
Gene length, protein length 435 bp, 145 aa
Immediate neighbours yeeI, yezE
Sequences Protein DNA DNA_with_flanks
Genetic context
This image was kindly provided by SubtiList
Expression at a glance   PubMed















Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

SigK regulon, GerE regulon

The gene

Basic information

  • Locus tag: BSU06850

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

CotE, SafA, and SpoVID are required for proper localization, clolocalizes with YabG PubMed

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

<pubmed>10714992, 19933362,19060142, 22171814</pubmed>