GamR: Difference between revisions
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* '''Description:''' | * '''Description:''' transcriptional repressor ([[GntR family]]) of the ''[[gamA]]-[[gamP]]'' operon <br/><br/> | ||
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
{{SubtiWiki regulon|[[YbgA regulon]]}} | |||
= The [[YbgA regulon]]: = | |||
* ''[[gamA]]-[[gamP]]'', ''[[ybgA]]-[[ybgB]]'' | |||
=The gene= | =The gene= | ||
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=Expression and regulation= | =Expression and regulation= | ||
* '''Operon:''' | * '''Operon:''' ''[[ybgA]]-[[ybgB]]'' {{PubMed|23667565}} | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybgA_257791_258498_1 ybgA] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybgA_257791_258498_1 ybgA] {{PubMed|22383849}} | ||
* '''Sigma factor:''' | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|23667565}} | ||
* '''Regulation:''' | * '''Regulation:''' | ||
** induced by glucosamine ([[YbgA]]) {{PubMed|23667565}} | |||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
** [[YbgA]]: transcription repression {{PubMed|23667565}} | |||
* '''Additional information:''' | * '''Additional information:''' | ||
Revision as of 16:52, 24 May 2013
- Description: transcriptional repressor (GntR family) of the gamA-gamP operon
| Gene name | ybgA |
| Synonyms | |
| Essential | no |
| Product | transcriptional regulator (GntR family) |
| Function | putatively regulation of the gamA-gamP operon |
| Gene expression levels in SubtiExpress: ybgA | |
| MW, pI | 26 kDa, 5.559 |
| Gene length, protein length | 705 bp, 235 aa |
| Immediate neighbours | gamA, ybgB |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Categories containing this gene/protein
cell wall degradation/ turnover, utilization of specific carbon sources, transcription factors and their control
This gene is a member of the following regulons
The YbgA regulon:
The gene
Basic information
- Locus tag: BSU02370
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O31459
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
<pubmed> 10627040 </pubmed>