EpsF: Difference between revisions
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|style="background:#ABCDEF;" align="center"|'''Function''' || [[biofilm formation]] | |style="background:#ABCDEF;" align="center"|'''Function''' || [[biofilm formation]] | ||
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU34320 epsF] | ||
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm]''' | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[epsG]]'', ''[[epsE]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[epsG]]'', ''[[epsE]]'' | ||
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| | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU34320 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU34320 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU34320 Advanced_DNA] | ||
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|colspan="2" | '''Genetic context''' <br/> [[Image:yveP_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yveP_context.gif]] | ||
Revision as of 13:54, 13 May 2013
- Description: similar to glycosyltransferase
| Gene name | epsF |
| Synonyms | yveP |
| Essential | |
| Product | unknown |
| Function | biofilm formation |
| Gene expression levels in SubtiExpress: epsF | |
| Regulation of this protein in SubtiPathways: Biofilm | |
| MW, pI | 42 kDa, 6.934 |
| Gene length, protein length | 1152 bp, 384 aa |
| Immediate neighbours | epsG, epsE |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Categories containing this gene/protein
This gene is a member of the following regulons
AbrB regulon, EAR riboswitch, SinR regulon
The gene
Basic information
- Locus tag: BSU34320
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: glycosyltransferase 1 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P71055
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
- induction by sequestration of SinR by SinI or SlrA PubMed
- the epsA-epsB-epsC-epsD-epsE-epsF-epsG-epsH-epsI-epsJ-epsK-epsL-epsM-epsN-epsO operon is not expressed in a ymdB mutant PubMed
- the amount of the mRNA is substantially decreased upon depletion of RNase Y (this is likely due to the increased stability of the sinR mRNA) PubMed
- the EAR riboswitch (eps-associated RNA switch) located between epsB and epsC mediates processive antitermination and allows expression of the long eps operon PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Richard Losick, Harvard Univ., Cambridge, USA homepage
Your additional remarks
References
Reviews
<pubmed>20735481 </pubmed>
Original publications
The EAR RNA switch
<pubmed>20374491 20230605 </pubmed>
Other original publications
<pubmed>15661000,16430695,18047568,18647168 20817675 21856853 21815947</pubmed>