Revision as of 16:47, 21 August 2012

Gene name	ydaP
Synonyms
Essential	no
Product	putative glyoxalate carboligase
Function	utilization of glycolate and glyoxylate
*Gene expression levels in SubtiExpress*: ydaP
MW, pI	62 kDa, 5.217
Gene length, protein length	1722 bp, 574 aa
Immediate neighbours	mutT, ydzK
Get the DNA and protein sequences (Barbe et al., 2009)
Genetic context This image was kindly provided by SubtiList
Expression at a glance PubMed

Categories containing this gene/protein

general stress proteins (controlled by SigB), poorly characterized/ putative enzymes

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

Locus tag: BSU04340

Phenotypes of a mutant

Database entries

DBTBS entry: [1]

SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

Catalyzed reaction/ biological activity:

Protein family:

Paralogous protein(s):

Extended information on the protein

Kinetic information:

Domains:

Modification:

Cofactor(s):

Effectors of protein activity:

Interactions:

Localization:

Database entries

Structure:

UniProt: P96591

KEGG entry: [3]

E.C. number:

Additional information

Expression and regulation

Operon: ydaP PubMed

Expression browser: ydaP PubMed

Sigma factor: SigB PubMed

Regulation: induced by stress (SigB) PubMed

Regulatory mechanism:

Additional information:

Biological materials

Mutant: GP457 (spc), available in Stülke lab

Expression vector:

lacZ fusion:

GFP fusion:

two-hybrid system:

Antibody:

Labs working on this gene/protein

Your additional remarks

References

@@ Line 1: / Line 1: @@
-SNsopd  <a href="http://ohifoairszfj.com/">ohifoairszfj</a>, [url=http://qwuwzotzbdmt.com/]qwuwzotzbdmt[/url], [link=http://jztsqfdvnvva.com/]jztsqfdvnvva[/link], http://aowtuvrqsbfy.com/
+{| align="right" border="1" cellpadding="2"
+|-
+|style="background:#ABCDEF;" align="center"|'''Gene name'''
+|''ydaP''
+|-
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|-
+|style="background:#ABCDEF;" align="center"| '''Essential''' || no
+|-
+|style="background:#ABCDEF;" align="center"| '''Product''' || putative glyoxalate carboligase
+|-
+|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of glycolate and glyoxylate
+|-
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04340 ydaP]
+|-
+|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 62 kDa, 5.217
+|-
+|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1722 bp, 574 aa
+|-
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mutT]]'', ''[[ydzK]]''
+|-
+|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12241&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|-
+|colspan="2" | '''Genetic context''' <br/> [[Image:ydaP_context.gif]]
+ <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
+|-
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaP_488830_490554_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ydaP_expression.png|500px]]
+|-
+|}
+__TOC__
+<br/><br/><br/><br/>
+<br/><br/><br/><br/>
+<br/><br/><br/><br/>
+<br/><br/><br/><br/>
+<br/><br/><br/><br/>
+<br/><br/>
+= [[Categories]] containing this gene/protein =
+{{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}},
+{{SubtiWiki category|[[poorly characterized/ putative enzymes]]}}
+= This gene is a member of the following [[regulons]] =
+{{SubtiWiki regulon|[[SigB regulon]]}}
+=The gene=
+=== Basic information ===
+* '''Locus tag:''' BSU04340
+===Phenotypes of a mutant ===
+=== Database entries ===
+* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ydaP.html]
+* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12063]
+=== Additional information===
+=The protein=
+=== Basic information/ Evolution ===
+* '''Catalyzed reaction/ biological activity:'''
+* '''Protein family:'''
+* '''Paralogous protein(s):'''
+=== Extended information on the protein ===
+* '''Kinetic information:'''
+* '''Domains:'''
+* '''Modification:'''
+* '''Cofactor(s):'''
+* '''Effectors of protein activity:'''
+* '''[[SubtInteract|Interactions]]:'''
+* '''[[Localization]]:'''
+=== Database entries ===
+* '''Structure:'''
+* '''UniProt:''' [http://www.uniprot.org/uniprot/P96591 P96591]
+* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU04340]
+* '''E.C. number:'''
+=== Additional information===
+=Expression and regulation=
+* '''Operon:''' ''ydaP'' {{PubMed|10220166}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaP_488830_490554_1 ydaP] {{PubMed|22383849}}
+* '''Sigma factor:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
+* '''Regulation:'''  induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
+* '''Regulatory mechanism:'''
+* '''Additional information:'''
+=Biological materials =
+* '''Mutant:''' GP457 (spc), available in [[Stülke]] lab
+* '''Expression vector:'''
+* '''lacZ fusion:'''
+* '''GFP fusion:'''
+* '''two-hybrid system:'''
+* '''Antibody:'''
+=Labs working on this gene/protein=
+=Your additional remarks=
+=References=
+<pubmed>10220166,,15805528, </pubmed>
+[[Category:Protein-coding genes]]