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* '''Description:''' alpha-L-arabinofuranosidase <br/><br/>
'''Name of the page???'''


{| align="right" border="1" cellpadding="2"
= [[Sigma factors]] =
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''abf2''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''xsa ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || alpha-L-arabinofuranosidase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || arabinan degradation
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 56 kDa, 5.329 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1485 bp, 495 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trxA]]'', ''[[etfA]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14811&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|-
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:xsa_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}


__TOC__
* [[SigB regulon]]
* [[SigD regulon]]
* [[SigE regulon]]
* [[SigF regulon]]
* [[SigG regulon]]
* [[SigH regulon]]
* [[SigI regulon]]
* [[SigK regulon]]
* [[SigL regulon]]
* [[SigM regulon]]
* [[SigW regulon]]
* [[SigX regulon]]
* [[SigY regulon]]
* [[Xpf regulon]]
* [[YlaC regulon]]
* [[YvrI-YvrHa regulon]]


<br/><br/><br/><br/>
= DNA-binding regulators =


=The gene=
* [[Abh regulon]]
* [[AbrB regulon]]
* [[AcoR regulon]]
* [[AdaA regulon]]
* [[AdhR regulon]]
* [[AhrC regulon]]
* [[AlsR regulon]]
* [[AnsR regulon]]
* [[AraR regulon]]
* [[ArsR regulon]]
* [[AseR regulon]]
* [[AzlB regulon]]
* [[BceR regulon]]
* [[BirA regulon]]
* [[BkdR regulon]]
* [[BltR regulon]]
* [[BmrR regulon]]
* [[BsdA regulon]]
* [[Btr regulon]]
* [[CatR regulon]]
* [[CcpA regulon]]
* [[CcpC regulon]]
* [[CcpN regulon]]
* [[CggR regulon]]
* [[CitR regulon]]
* [[CitT regulon]]
* [[CodY regulon]]
* [[ComA regulon]]
* [[ComK regulon]]
* [[Cso regulon]]
* [[CsoR regulon]]
* [[CssR regulon]]
* [[CtsR regulon]]
* [[CymR regulon]]
* [[CysL regulon]]
* [[CzrA regulon]]
* [[DegU regulon]]
* [[DeoR regulon]]
* [[DesR regulon]]
* [[DnaA regulon]]
* [[ExuR regulon]]
* [[FadR regulon]]
* [[FapR regulon]]
* [[FatR regulon]]
* [[Fnr regulon]]
* [[FruR regulon]]
* [[Fur regulon]]
* [[GabR regulon]]
* [[GerE regulon]]
* [[GerR regulon]]
* [[GlnL regulon]]
* [[GlnR regulon]]
* [[GltC regulon]]
* [[GltR regulon]]
* [[GlvR regulon]]
* [[GmuR regulon]]
* [[GntR regulon]]
* [[GutR regulon]]
* [[HrcA regulon]]
* [[HxlR regulon]]
* [[ImmR regulon]]
* [[IolR regulon]]
* [[KdgR regulon]]
* [[KipR regulon]]
* [[LacR regulon]]
* [[LevR regulon]]
* [[LexA regulon]]
* [[LiaR regulon]]
* [[LicR regulon]]
* [[LmrA regulon]]
* [[LutR regulon]]
* [[LytR regulon]]
* [[MalR regulon]]
* [[ManR regulon]]
* [[MdtR regulon]]
* [[MhqR regulon]]
* [[MntR regulon]]
* [[Mta regulon]]
* [[MsmR regulon]]
* [[MtlR regulon]]
* [[NadR regulon]]
* [[NatR regulon]]
* [[NsrR regulon]]
* [[NtdR regulon]]
* [[OhrR regulon]]
* [[PadR regulon]]
* [[PerR regulon]]
* [[PhoP regulon]]
* [[PucR regulon]]
* [[PurR regulon]]
* [[ResD regulon]]
* [[Rex regulon]]
* [[RghR regulon]]
* [[RocR regulon]]
* [[Rok regulon]]
* [[RsfA regulon]]
* [[SalA regulon]]
* [[ScoC regulon]]
* [[SdpR regulon]]
* [[SenS regulon]]
* [[SinR regulon]]
* [[SlrR regulon]]
* [[Spo0A regulon]]
* [[SpoIIID regulon]]
* [[Spx regulon]]
* [[TnrA regulon]]
* [[TreR regulon]]
* [[WalR regulon]]
* [[Xre regulon]]
* [[XylR regulon]]
* [[YcbG regulon]]
* [[YclJ regulon]]
* [[YcnK regulon]]
* [[YdfI regulon]]
* [[YesS regulon]]
* [[YetL regulon]]
* [[YfhP regulon]]
* [[YfmP regulon]]
* [[YkrP regulon]]
* [[YodB regulon]]
* [[YofA regulon]]
* [[YrkP regulon]]
* [[YtlI regulon]]
* [[YtrA regulon]]
* [[YvoA regulon]]
* [[YvrHb regulon]]
* [[YwcC regulon]]
* [[YxaF regulon]]
* [[YxdJ regulon]]
* [[Zur regulon]]


=== Basic information ===
= RNA switches =


* '''Locus tag:''' BSU28510
* [[A-box riboswitch]]
* [[EAR riboswitch]]
* [[FMN-box riboswitch]]
* [[G-box riboswitch]]
* [[GlcT riboswitch]]
* [[glmS ribozyme]]
* [[GlpP riboswitch]]
* [[HutP riboswitch]]
* [[L-box riboswitch]]
* [[LicT riboswitch]]
* [[M-box riboswitch]]
* [[preQ1 riboswitch]]
* [[PyrR riboswitch]]
* [[RNA switch riboswitch]]
* [[RplT riboswitch]]
* [[SacT riboswitch]]
* [[SacY riboswitch]]
* [[S-box riboswitch]]
* [[T-box riboswitch]]
* [[Thi-box riboswitch]]
* [[TRAP riboswitch]]
* [[YdaO riboswitch]]


===Phenotypes of a mutant ===
= Additional regulatory mechanisms =


=== Database entries ===
* [[CitB regulon]]
 
* [[ComN regulon]]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/xsa.html]
* [[CsrA regulon]]
 
* [[FsrA regulon]]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11985]
* [[MifM regulon]]
 
* [[ratA regulon]]
=== Additional information===
* [[SR1 regulon]]
 
* [[Stringent response]]
 
 
= Categories containing this gene/protein =
{{SubtiWiki category|[[utilization of specific carbon sources]]}}
=The protein=
 
=== Basic information/ Evolution ===
 
* '''Catalyzed reaction/ biological activity:''' Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides (according to Swiss-Prot)
 
* '''Protein family:''' glycosyl hydrolase 51 family (according to Swiss-Prot)
 
* '''Paralogous protein(s):'''
 
=== Extended information on the protein ===
 
* '''Kinetic information:'''
 
* '''Domains:'''
 
* '''Modification:'''
 
* '''Cofactor(s):'''
 
* '''Effectors of protein activity:'''
 
* '''Interactions:'''
 
* '''Localization:'''
 
=== Database entries ===
 
* '''Structure:'''
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/P94552 P94552]
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU28510]
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/3.2.1.55 3.2.1.55]
 
=== Additional information===
 
=Expression and regulation=
 
* '''Operon:''' ''abf2'' [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed]
 
* '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed]
 
* '''Regulation:'''
** induced by arabinose ([[AraR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed]
 
* '''Regulatory mechanism:'''
** [[AraR]]:  transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed]
 
* '''Additional information:'''
 
=Biological materials =
 
* '''Mutant:'''
 
* '''Expression vector:'''
       
* '''lacZ fusion:'''
 
* '''GFP fusion:'''
 
* '''two-hybrid system:'''
 
* '''Antibody:'''
 
=Labs working on this gene/protein=
 
=Your additional remarks=
 
=References=
 
<pubmed>14973026,18757805,,14973026, </pubmed>
 
[[Category:Protein-coding genes]]

Revision as of 14:07, 7 December 2010

Name of the page???

Sigma factors

DNA-binding regulators

RNA switches

Additional regulatory mechanisms

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