Revision as of 10:57, 13 July 2009

Description: transcriptional activator of competence development and sporulation genes, represses SigD-dependent flagellar genes, activates eps and yqxM operons

Gene name	slrR
Synonyms	yveJ, slr
Essential	no
Product	transcription regulator
Function	regulation of initiation of biofilm formation
MW, pI	17 kDa, 9.63
Gene length, protein length	456 bp, 152 aa
Immediate neighbours	epsA, pnbA
Get the DNA and protein sequences (Barbe et al., 2009)
Genetic context This image was kindly provided by SubtiList

The gene

Basic information

Locus tag: BSU34380

Phenotypes of a mutant

Database entries

DBTBS entry: no entry

SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

Catalyzed reaction/ biological activity:

Protein family:

Paralogous protein(s): SinR

Extended information on the protein

Kinetic information:

Domains:

Modification:

Cofactor(s):

Effectors of protein activity:

Interactions:

Localization:

Database entries

Structure:

Swiss prot entry: P71049

KEGG entry: [2]

E.C. number:

Additional information

Expression and regulation

Operon:

Sigma factor:

Regulation:

Regulatory mechanism:

Additional information:

Biological materials

Mutant:

Expression vector:

lacZ fusion:

GFP fusion:

two-hybrid system:

Antibody:

Labs working on this gene/protein

Your additional remarks

References

@@ Line 1: / Line 1: @@
-#REDIRECT [[slr]]
+* '''Description:''' transcriptional activator of competence development and sporulation genes, represses SigD-dependent flagellar genes, activates eps and yqxM operons <br/><br/>
+{| align="right" border="1" cellpadding="2"
+|-
+|style="background:#ABCDEF;" align="center"|'''Gene name'''
+|''slrR''
+|-
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yveJ, slr''
+|-
+|style="background:#ABCDEF;" align="center"| '''Essential''' || no
+|-
+|style="background:#ABCDEF;" align="center"| '''Product''' || transcription regulator
+|-
+|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of initiation of biofilm formation
+|-
+|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 9.63
+|-
+|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 456 bp, 152 aa
+|-
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[epsA]]'', ''[[pnbA]]''
+|-
+|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15443&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|-
+|colspan="2" | '''Genetic context''' <br/> [[Image:slr_context.gif]]
+ <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
+|-
+|}
+__TOC__
+<br/><br/><br/><br/>
+=The gene=
+=== Basic information ===
+* '''Locus tag:''' BSU34380
+===Phenotypes of a mutant ===
+=== Database entries ===
+* '''DBTBS entry:''' no entry
+* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11858]
+=== Additional information===
+=The protein=
+=== Basic information/ Evolution ===
+* '''Catalyzed reaction/ biological activity:'''
+* '''Protein family:'''
+* '''Paralogous protein(s):''' [[SinR]]
+=== Extended information on the protein ===
+* '''Kinetic information:'''
+* '''Domains:'''
+* '''Modification:'''
+* '''Cofactor(s):'''
+* '''Effectors of protein activity:'''
+* '''Interactions:'''
+* '''Localization:'''
+=== Database entries ===
+* '''Structure:'''
+* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P71049 P71049]
+* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU34380]
+* '''E.C. number:'''
+=== Additional information===
+=Expression and regulation=
+* '''Operon:'''
+* '''[[Sigma factor]]:'''
+* '''Regulation:'''
+* '''Regulatory mechanism:'''
+* '''Additional information:'''
+=Biological materials =
+* '''Mutant:'''
+* '''Expression vector:'''
+* '''lacZ fusion:'''
+* '''GFP fusion:'''
+* '''two-hybrid system:'''
+* '''Antibody:'''
+=Labs working on this gene/protein=
+=Your additional remarks=
+=References=
+<pubmed>18430133,18647168,, </pubmed>