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RuvB: Difference between revisions

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* '''Description:''' Holliday junction DNA helicase, part of the [[RuvA]]-[[RuvB]] branch migration translocase <br/><br/>
{{#bank: RuvB}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ruvB''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || Holliday junction DNA helicase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || [[DNA repair/ recombination]] 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU27730 ruvB]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RuvB RuvB]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 37 kDa, 5.152 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1002 bp, 334 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrzS]]'', ''[[ruvA]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU27730 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU27730 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU27730 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ruvB_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ruvB_2835150_2836154_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ruvB_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU27730]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[DNA repair/ recombination]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[LexA regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU27730
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU27730&redirect=T BSU27730]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ruvAB.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12669]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
** [[RuvB]]-ATP stimulates [[RecU]]-mediated Holliday junction resolution {{PubMed|24770420}}
* '''Protein family:''' ruvB family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''[[Domains]]:'''
* '''Modification:'''
* '''[[Cofactors]]:'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[RecU]]-[[RuvB]] {{PubMed|24770420,21600217}}
** formation of a ternary complex [[RecU]]-[[RuvB]]-Holliday junction DNA {{PubMed|24770420}}
** [[RuvA]]-[[RuvB]]
* '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU27730&redirect=T BSU27730]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/O32055 O32055]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU27730]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[ruvA]]-[[ruvB]]'' {{PubMed|16267290}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ruvB_2835150_2836154_-1 ruvB] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
** induced upon DNA damage ([[LexA]]) {{PubMed|16267290}}
* '''Regulatory mechanism:'''
** [[LexA]]: transcription repression {{PubMed|16267290}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
** 1A896 (no resistance), {{PubMed|16020779}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A896&Search=1A896 BGSC]
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
== Reviews ==
<pubmed> 22933559 9442895</pubmed>
== Original publications ==
<pubmed>16267290, 24770420</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 11:00, 10 August 2015