Jump to content

FrlR: Difference between revisions

From SubtiWiki
No edit summary
 
Line 1: Line 1:
* '''Description:''' transcriptional regulator ([[GntR family]]) <br/><br/>
{{#bank: FrlR}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''frlR''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yurK ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator ([[GntR family]])
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of utilization of sugar amines
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32560 frlR]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 6.419 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 726 bp, 242 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yurJ]]'', ''[[frlD]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU32560 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU32560 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU32560 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yurK_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=frlR_3346298_3347026_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:frlR_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32560]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[utilization of specific carbon sources]]}},
{{SubtiWiki category|[[utilization of nitrogen sources other than amino acids]]}},
{{SubtiWiki category|[[transcription factors and their control]]}}
= This gene is a member of the following [[regulons]] =
=The [[FrlR regulon]]:=
* ''[[frlB]]-[[frlO]]-[[frlN]]-[[frlM]]-[[frlD]]''
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU32560
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU32560&redirect=T BSU32560]
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13997]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU32560&redirect=T BSU32560]
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2IKK 2IKK] (C-terminal domain)
* '''UniProt:''' [http://www.uniprot.org/uniprot/O32152 O32152]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU32560]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=frlR_3346298_3347026_1 frlR] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
** number of protein molecules per cell (minimal medium with glucose and ammonium): 234 {{PubMed|24696501}}
** number of protein molecules per cell (complex medium with amino acids, without glucose): 99 {{PubMed|24696501}}
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed> 21347729, 21398478</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 17:44, 11 June 2014