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UvrC: Difference between revisions

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* '''Description:''' excinuclease ABC (subunit C) <br/><br/>
{{#bank: UvrC}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''uvrC''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''uvrB ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || excinuclease ABC (subunit C)
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|style="background:#ABCDEF;" align="center"|'''Function''' || DNA repair after UV damage
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU28490 uvrC]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=UvrC UvrC]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 69 kDa, 9.503 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1794 bp, 598 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[lysC]]'', ''[[trxA]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU28490 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU28490 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU28490 DNA_with_flanks]
|-
|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:uvrC_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=uvrC_2911116_2912888_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:uvrC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU28490]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[DNA repair/ recombination]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[LexA regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU28490
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU28490&redirect=T BSU28490]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/uvrC.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10349]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' uvrC family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[UvrB]]-[[UvrC]] {{PubMed|16464004}}
* '''[[Localization]]:'''
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU28490&redirect=T BSU28490]
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3C65 3C65] (5' endonuclease domain, Geobacillus stearothermophilus)
* '''UniProt:''' [http://www.uniprot.org/uniprot/P14951 P14951]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU28490]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''uvrC'' {{PubMed|16267290}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=uvrC_2911116_2912888_-1 uvrC] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
** induced upon DNA damage ([[LexA]]) {{PubMed|16267290}}
* '''Regulatory mechanism:'''
** [[LexA]]: transcription repression {{PubMed|16267290}}]
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews==
<pubmed>16464004 15927210 7801120  22933559 </pubmed>
== Original publications ==
<pubmed>2174442,2559145 ,16267290, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 07:19, 3 March 2015