Jump to content

PstBA: Difference between revisions

From SubtiWiki
No edit summary
No edit summary
 
Line 1: Line 1:
* '''Description:''' phosphate [[ABC transporter]] (ATP-binding protein) <br/><br/>
{{#bank: PstBA}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''pstBA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''pstB, yqgJ, yzmE ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || phosphate [[ABC transporter]] (ATP-binding protein)
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || high-affinity phosphate uptake
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24960 pstBA]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=PstBA PstBA]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 7.897 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 807 bp, 269 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pstBB]]'', ''[[pstA]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU24960 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU24960 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU24960 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:pstBA_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=pstBA_2578003_2578812_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:pstBA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24960]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[ABC transporters]]}},
{{SubtiWiki category|[[phosphate metabolism]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[PhoP regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU24960
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU24960&redirect=T BSU24960]
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11378]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' ATP + H<sub>2</sub>O + phosphate(Out) = ADP + phosphate + phosphate(In) (according to Swiss-Prot)
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** ([[PstBA]]-[[PstBB]])-([[PstA]]-[[PstC]])-[[PstS]] {{PubMed|10092453}}
* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU24960&redirect=T BSU24960]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P46341 P46341]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU24960]
* '''E.C. number:''' [http://www.expasy.org/enzyme/3.6.3.27 3.6.3.27]
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[pstS]]-[[pstC]]-[[pstA]]-[[pstBA]]-[[pstBB]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/9098050 PubMed]
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=pstBA_2578003_2578812_-1 pstBA] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/9098050 PubMed]
* '''Regulation:'''
** expressed under conditions of phosphate limitation (5000-fold induced) ([[PhoP]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/9098050 PubMed]
* '''Regulatory mechanism:'''
** [[PhoP]]-P: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/9098050,9593301 PubMed]
* '''Additional information:'''
** mRNA processing between ''[[pstS]]'' and ''[[pstC]]'' to maintain higher concentrations of [[PstS]] relative to other components of the [[ABC transporter]] {{PubMed|15289558}}
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
[[Marion Hulett]], University of Illinois at Chicago, USA [http://www.uic.edu/depts/bios/faculty/hulett/hulettm.shtml Homepage]
=Your additional remarks=
=References=
<pubmed>15289558,10092453,12897025,10913081,9098050,9098050,9593301, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 10:01, 17 April 2014