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CtaA: Difference between revisions

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* '''Description:''' heme A synthase <br/><br/>
{{#bank: CtaA}}


{| align="right" border="1" cellpadding="2"
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ctaA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || heme A synthase
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|style="background:#ABCDEF;" align="center"|'''Function''' || heme biosynthesis
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14870 ctaA]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 33 kDa, 9.644 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 918 bp, 306 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pycA]]'', ''[[ctaB]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU14870 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU14870 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU14870 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ctaA_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ctaA_1558034_1558954_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ctaA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14870]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
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<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[biosynthesis of cofactors]]}},
{{SubtiWiki category|[[sporulation proteins]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[ResD regulon]]}},
{{SubtiWiki regulon|[[SigE regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU14870
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU14870&redirect=T BSU14870]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ctaA.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10213]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' heme A synthesis from protoheme IX (heme B)
* '''Protein family:''' COX15/ctaA family, Type 1 subfamily (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
** contains 8 transmembrane segments
* '''Modification:'''
* '''Cofactor(s):''' heme B
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
** cell membrane (according to Swiss-Prot)
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU14870&redirect=T BSU14870]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P12946 P12946]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU14870]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''ctaA'' {{PubMed|2549007}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ctaA_1558034_1558954_-1 ctaA] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigA]] {{PubMed|11325953}}, [[SigE]] {{PubMed|2549007,11325953}}
* '''Regulation:'''
** expressed under anaerobic conditions ([[ResD]]) {{PubMed|10972837,11325953}}
* '''Regulatory mechanism:'''
** [[ResD]]: transcription activation {{PubMed|10972837,11325953}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
== Reviews ==
<pubmed> 22484221 </pubmed>
== Original publications ==
<pubmed>15576792,7961419,16321940,11325953,18358840,7968515,15491161,10972837,,8665949,10972837, 2549007 19174544 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 11:47, 8 April 2014