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NprE: Difference between revisions

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* '''Description:''' extracellular neutral protease B <br/><br/>
{{#bank: NprE}}


{| align="right" border="1" cellpadding="2"
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''nprE''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|style="background:#ABCDEF;" align="center"| '''Product''' || extracellular neutral protease B
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|style="background:#ABCDEF;" align="center"|'''Function''' || degradation of proteins
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14700 nprE]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 56 kDa, 7.481 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1563 bp, 521 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yktD]]'', ''[[ylaA]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU14700 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU14700 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU14700 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:nprE_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nprE_1540036_1541601_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:nprE_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14700]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[utilization of nitrogen sources other than amino acids]]}},
{{SubtiWiki category|[[proteolysis]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[AbrB regulon]]}},
{{SubtiWiki regulon|[[ScoC regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU14700
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/nprE.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10448]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' Similar, but not identical, to that of thermolysin (according to Swiss-Prot)
* '''Protein family:''' peptidase M4 family (according to Swiss-Prot)
* '''Paralogous protein(s):''' [[NprB]]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''[[Domains]]:'''
* '''Modification:'''
* '''[[Cofactors]]:'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
** extracellular (signal peptide) [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed]
=== Database entries ===
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1NPC 1NPC] (of ''Bacillus cereus'')
* '''UniProt:''' [http://www.uniprot.org/uniprot/P68736 P68736]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU14700]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''nprE'' (according to [http://dbtbs.hgc.jp/COG/prom/nprE.html DBTBS])
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nprE_1540036_1541601_-1 nprE] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
** repressed during exponential growth ([[ScoC]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/1906467 PubMed]
* '''Regulatory mechanism:'''
** [[ScoC]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/1906467 PubMed]
** [[AbrB]]: transcription repression {{PubMed|20817675}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews==
<pubmed>20735481 </pubmed>
==Original publications==
<pubmed>1906467,18957862,20817675 24115457 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 13:37, 2 April 2014