Jump to content

GlsA: Difference between revisions

From SubtiWiki
No edit summary
No edit summary
 
Line 1: Line 1:
* '''Description:''' glutaminase, low affinity for glutamine <br/><br/>
{{#bank: GlsA}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''glsA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ybgJ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || glutaminase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || glutamine degradation
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02430 glsA]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=glsA glsA]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36 kDa, 5.315 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 981 bp, 327 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[glnT]]'', ''[[glnK]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02430 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02430 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02430 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ybgJ_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=glsA_264191_265174_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:glsA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02430]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/><br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[utilization of amino acids]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[GlnL regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU02430
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ybgJ-ybgH.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12753]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' l-glutamine + H<sub>2</sub>O = L-glutamate + NH<sub>3</sub> (according to Swiss-Prot)
* '''Protein family:''' glutaminase family (according to Swiss-Prot)
* '''Paralogous protein(s):''' [[YlaM]]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
=== Database entries ===
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3BRM 3BRM] [http://www.rcsb.org/pdb/explore.do?structureId=1MKI 1MKI]{{PubMed|18459799}}
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31465 O31465]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU02430]
* '''E.C. number:''' [http://www.expasy.org/enzyme/3.5.1.2 3.5.1.2]
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[glsA]]-[[glnT]]'' {{PubMed|15995196}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=glsA_264191_265174_-1 glsA] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigA]] {{PubMed|15995196}}
* '''Regulation:'''
** induced in the presence of glutamine ([[GlnL]]) {{PubMed|15995196}}
* '''Regulatory mechanism:'''
** [[GlnL]]: transcription activation {{PubMed|15995196}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>15995196,18459799 , </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 12:54, 2 April 2014