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CotJC: Difference between revisions

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* '''Description:''' polypeptide composition of the spore coat <br/><br/>
{{#bank: CotJC}}
{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''cotJC''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
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|style="background:#ABCDEF;" align="center"|'''Function''' || polypeptide composition of the spore coat
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06910 cotJC]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CotJC CotJC]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 4.901 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 567 bp, 189 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotJB]]'', ''[[yesJ]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU06910 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU06910 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU06910 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:cotJC_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotJC_756417_756986_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:cotJC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06910]]
|-
|}


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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[sporulation proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigE regulon]]}},
{{SubtiWiki regulon|[[SpoIIID regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU06910
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cotJABC-yesJK.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11801]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' manganese catalase family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[CotJA]]-[[CotJC]] {{PubMed|9364920}}
* '''[[Localization]]:'''
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/Q45538 Q45538]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU06910]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[cotJA]]-[[cotJB]]-[[cotJC]]-[[yesJ]]-[[yesK]]'' {{PubMed|7768848}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotJC_756417_756986_1 cotJC] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigE]] {{PubMed|7768848,15699190}}
* '''Regulation:''' expressed during sporulation ([[SigE]], [[SpoIIID]]) {{PubMed|7768848}}
* '''Regulatory mechanism:''' [[SpoIIID]]: transcription activation {{PubMed|7768848}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>9364920,7768848,, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 13:09, 2 April 2014