FatR: Difference between revisions
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
{{SubtiWiki category|[[electron transport/ other]]}}, | {{SubtiWiki category|[[electron transport/ other]]}}, | ||
{{SubtiWiki category|[[lipid metabolism/ other]]}}, | |||
{{SubtiWiki category|[[transcription factors and their control]]}}, | {{SubtiWiki category|[[transcription factors and their control]]}}, | ||
{{SubtiWiki category|[[cell envelope stress proteins (controlled by SigM, V, W, X, Y)]]}} | {{SubtiWiki category|[[cell envelope stress proteins (controlled by SigM, V, W, X, Y)]]}}, | ||
{{SubtiWiki category|[[phosphoproteins]]}} | |||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
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* '''Modification:''' | * '''Modification:''' | ||
** phosphorylated by [[PtkA]] on Tyr-45, this results in displacement of FatR from the DNA {{PubMed|23939619}} | |||
* '''Cofactor(s):''' | * '''Cofactor(s):''' | ||
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* '''[[SubtInteract|Interactions]]:''' | * '''[[SubtInteract|Interactions]]:''' | ||
** [[FatR]]-[[TkmA]] {{PubMed|23939619}} | |||
** [[FatR]]-[[PtkA]] {{PubMed|23939619}} | |||
* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
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=References= | =References= | ||
<pubmed>11734890,11574077,11377867,10917605,12207695,9636707 23939619 21926231</pubmed> | |||
<pubmed>11734890,11574077,11377867,10917605,12207695,9636707</pubmed> | |||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 08:23, 14 August 2013
| Gene name | fatR |
| Synonyms | yrhI, bscR |
| Essential | no |
| Product | transcriptional repressor of the fatR-yrhJ operon (TetR family) |
| Function | unknown |
| Gene expression levels in SubtiExpress: fatR | |
| MW, pI | 22 kDa, 5.621 |
| Gene length, protein length | 582 bp, 194 aa |
| Immediate neighbours | yrhJ, yrhH |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Categories containing this gene/protein
electron transport/ other, lipid metabolism/ other, transcription factors and their control, cell envelope stress proteins (controlled by SigM, V, W, X, Y), phosphoproteins
This gene is a member of the following regulons
FatR regulon, SigM regulon, SigW regulon, SigX regulon
The FatR regulon:
The gene
Basic information
- Locus tag: BSU27170
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O08335
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
<pubmed>11734890,11574077,11377867,10917605,12207695,9636707 23939619 21926231</pubmed>