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Cca: Difference between revisions

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= This gene is a member of the following [[regulons]] =
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[Spx regulon]]}}




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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cca_2355880_2357073_-1 cca] {{PubMed|22383849}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cca_2355880_2357073_-1 cca] {{PubMed|22383849}}


* '''Sigma factor:'''  
* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|23894131}}


* '''Regulation:'''  
* '''Regulation:'''  
** induced by diamide stess (thiol depletion) ([[Spx]]) {{PubMed|23894131}}


* '''Regulatory mechanism:'''  
* '''Regulatory mechanism:'''  
** [[Spx]]: transcription activation {{PubMed|23894131}}


* '''Additional information:'''
* '''Additional information:'''
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<pubmed>17179213,12526808,20360175 ,9829937, 16109934 </pubmed>
<pubmed>17179213,12526808,20360175 ,9829937, 16109934 </pubmed>
==Operon and expression==
==Operon and expression==
<pubmed> 20308541 </pubmed>  
<pubmed> 20308541 23894131</pubmed>  
[[Category:Protein-coding genes]]
[[Category:Protein-coding genes]]

Revision as of 12:14, 1 August 2013

  • Description: tRNA nucleotidyltransferase, maturation of the single-copy tRNACys, which lacks an encoded CCA 3' end

Gene name cca
Synonyms papS, ypjI
Essential yes PubMed
Product tRNA nucleotidyltransferase
Function tRNA modification
Gene expression levels in SubtiExpress: cca
MW, pI 45 kDa, 8.041
Gene length, protein length 1191 bp, 397 aa
Immediate neighbours birA, bshA
Sequences Protein DNA DNA_with_flanks
Genetic context
This image was kindly provided by SubtiList
Expression at a glance   PubMed















Categories containing this gene/protein

translation, essential genes

This gene is a member of the following regulons

Spx regulon


The gene

Basic information

  • Locus tag: BSU22450

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: ATP + tRNA(n) = diphosphate + tRNA(n+1) (according to Swiss-Prot)
  • Protein family: the protein is similar to the E. coli poly(A) polymerase
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1MIV (Geobacillus stearothermophilus 44% identity)
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Regulation:
    • induced by diamide stess (thiol depletion) (Spx) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

<pubmed> 19883645 16364630 20155482 18523015 </pubmed>

Original publications

<pubmed>17179213,12526808,20360175 ,9829937, 16109934 </pubmed>

Operon and expression

<pubmed> 20308541 23894131</pubmed>