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DacC: Difference between revisions

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* '''Description:''' [[penicillin-binding protein]] 4A, D-alanyl-D-alanine carboxypeptidase <br/><br/>
{{#bank: DacC}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''dacC''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''pbp ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || [[penicillin-binding protein]] 4A, <br/>D-alanyl-D-alanine carboxypeptidase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || carboxypeptidase
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18350 dacC]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 52 kDa, 5.413 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1473 bp, 491 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ppsA]]'', ''[[galM]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18350 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18350 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18350 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:dacC_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dacC_1998340_1999815_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:dacC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18350]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[cell wall synthesis]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigH regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU18350
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yoxA-dacC.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10969]
=== Additional information===
* A mutation was found in this gene after evolution under relexed selection for sporulation  {{PubMed|21821766}}
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' cleavage ofD-Ala-D-Ala interpeptide bridges in peptidoglycan {{PubMed|19758330}}
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** may be part of the [[cell wall biosynthetic complex]] {{PubMed|17981078}}
* '''[[Localization]]:'''
=== Database entries ===
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1W5D 1W5D],  [http://www.rcsb.org/pdb/explore.do?structureId=2J9P 2J9P] (complex with a peptidoglycan mimetic peptide)
* '''UniProt:''' [http://www.uniprot.org/uniprot/P39844 P39844]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU18350]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[galM]]-[[dacC]]'' {{PubMed|9733705}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dacC_1998340_1999815_-1 dacC] {{PubMed|22383849}}
* '''[[Sigma factor]]:''' [[SigH]] {{PubMed|9733705}}, [[SigB]] {{PubMed|10482513}}
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed> 9733705 10482513 19758330 14731276,17582436 ,9864321, 21821766 22029692 23560856 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 13:51, 2 April 2014