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YabG: Difference between revisions

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* '''Description:''' protease<br/><br/>
{{#bank: YabG}}


{| align="right" border="1" cellpadding="2"
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yabG''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|style="background:#ABCDEF;" align="center"| '''Product''' || protease
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|style="background:#ABCDEF;" align="center"|'''Function''' || modification of spore coat proteins
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00430 yabG]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 33 kDa, 9.143 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 870 bp, 290 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ksgA]]'', ''[[veg]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00430 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00430 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00430 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yabG_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yabG_51680_52552_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yabG_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00430]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[proteolysis]]}},
{{SubtiWiki category|[[sporulation proteins]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigK regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU00430
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yabG.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10106]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' temperature-dependent modification of the coat proteins such as [[GerQ]] (together with [[Tgl]]) {{PubMed|16751597}}
* '''Protein family:''' peptidase U57 family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:''' forespore outer membrane (according to Swiss-Prot),  spore coat [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P37548 P37548]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU00430]
* '''E.C. number:'''
=== Additional information===
colocalizes in the spore coat with [[YeeK]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19060142 PubMed]
=Expression and regulation=
* '''Operon:''' ''yabG'' [http://www.ncbi.nlm.nih.gov/sites/entrez/10714992 PubMed]
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yabG_51680_52552_1 yabG] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigK]] {{PubMed|15699190,10714992}}
* '''Regulation:'''
** expressed late during sporulation in the mother cell ([[SigK]]) {{PubMed|15699190,10714992}}
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
** 1S128 ( ''yabG''::''erm''), {{PubMed|16751597}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1S128&Search=1S128 BGSC]
** 1S128 ( ''yabG''::''erm''), {{PubMed|16751597}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1S128&Search=1S128 BGSC]
** 1A814 ( ''yabG''::''spec''), {{PubMed|11267663}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A814&Search=1A814 BGSC]
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews==
<pubmed>,19797877 </pubmed>
==Original Publications==
<pubmed>10714992,19060142 ,16751597 , 15699190</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 12:46, 2 April 2014