Revision as of 12:08, 13 May 2013

Description: nutrient receptor

Gene name	gerKB
Synonyms
Essential	no
Product	nutrient receptor
Function	germination
*Gene expression levels in SubtiExpress*: gerKB
*Interactions involving this protein in SubtInteract*: GerKB
MW, pI	41 kDa, 8.921
Gene length, protein length	1119 bp, 373 aa
Immediate neighbours	gerKC, yclH
Sequences	Protein DNA Advanced_DNA
Genetic context This image was kindly provided by SubtiList
Expression at a glance PubMed

Categories containing this gene/protein

germination, membrane proteins

This gene is a member of the following regulons

SigG regulon, SpoVT regulon

The gene

Basic information

Locus tag: BSU03720

Phenotypes of a mutant

Database entries

DBTBS entry: [1]

SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

Catalyzed reaction/ biological activity:

Protein family: View classification (according to Swiss-Prot)

Paralogous protein(s):

Extended information on the protein

Kinetic information:

Domains:

Modification:

Cofactor(s):

Effectors of protein activity:

Interactions:
- GerKA-GerKB-GerKC (tentative receptor complex) PubMed
- GerKB is part of the germinosome in the spore inner membrane PubMed

Localization:
- spore inner membrane PubMed

Database entries

Structure:

UniProt: P49940

KEGG entry: [3]

E.C. number:

Additional information

Expression and regulation

Operon: gerKA-gerKC-gerKB (according to DBTBS)

Expression browser: gerKB PubMed

Sigma factor: SigG PubMed

Regulation:
- expressed during sporulation (SigG, SpoVT) PubMed

Regulatory mechanism:
- SpoVT: transcription repression PubMed

Additional information:

Biological materials

Mutant:

Expression vector:

lacZ fusion:

GFP fusion:

two-hybrid system:

Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed <pubmed>16707705,21696470,16352818, 23396907 </pubmed>

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03720 gerKB]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03720 gerKB]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/GerKB GerKB]
@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gerKC]]'', ''[[yclH]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12180&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03720 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03720 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03720 Advanced_DNA]
 |-
 |-