AlbF: Difference between revisions
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* '''Description:''' antilisterial bacteriocin (subtilosin) production <br/><br/> | |||
{| align="right" border="1" cellpadding="2" | |||
|- | |||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |||
|''albF'' | |||
|- | |||
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ywhN '' | |||
|- | |||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |||
|- | |||
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown | |||
|- | |||
|style="background:#ABCDEF;" align="center"|'''Function''' || antilisterial bacteriocin (subtilosin) production | |||
|- | |||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU37420 albF] | |||
|- | |||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 5.42 | |||
|- | |||
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1278 bp, 426 aa | |||
|- | |||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[albE]]'', ''[[albG]]'' | |||
|- | |||
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB15769]+-newId sequences] <br/> (Barbe ''et al.'', 2009)''' | |||
|- | |||
|colspan="2" | '''Genetic context''' <br/> [[Image:albF_context.gif]] | |||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | |||
|- | |||
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=albF_3841017_3842297_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:albF_expression.png|500px]] | |||
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|} | |||
__TOC__ | |||
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= [[Categories]] containing this gene/protein = | |||
{{SubtiWiki category|[[miscellaneous metabolic pathways]]}}, | |||
{{SubtiWiki category|[[biosynthesis of antibacterial compounds]]}} | |||
= This gene is a member of the following [[regulons]] = | |||
{{SubtiWiki regulon|[[AbrB regulon]]}}, | |||
{{SubtiWiki regulon|[[ResD regulon]]}}, | |||
{{SubtiWiki regulon|[[Rok regulon]]}} | |||
=The gene= | |||
=== Basic information === | |||
* '''Locus tag:''' BSU37420 | |||
===Phenotypes of a mutant === | |||
=== Database entries === | |||
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/sboAX-albABCDEFG.html] | |||
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12466] | |||
=== Additional information=== | |||
=The protein= | |||
=== Basic information/ Evolution === | |||
* '''Catalyzed reaction/ biological activity:''' | |||
* '''Protein family:''' peptidase M16 family (according to Swiss-Prot) | |||
* '''Paralogous protein(s):''' | |||
=== Extended information on the protein === | |||
* '''Kinetic information:''' | |||
* '''Domains:''' | |||
* '''Modification:''' | |||
* '''Cofactor(s):''' | |||
* '''Effectors of protein activity:''' | |||
* '''[[SubtInteract|Interactions]]:''' | |||
* '''[[Localization]]:''' | |||
=== Database entries === | |||
* '''Structure:''' | |||
* '''UniProt:''' [http://www.uniprot.org/uniprot/P71006 P71006] | |||
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU37420] | |||
* '''E.C. number:''' | |||
=== Additional information=== | |||
=Expression and regulation= | |||
* '''Operon:''' ''[[sboA]]-[[sboX]]-[[albA]]-[[albB]]-[[albC]]-[[albD]]-[[albE]]-[[albF]]-[[albG]]'' {{PubMed|10572140}} | |||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=albF_3841017_3842297_1 albF] {{PubMed|22383849}} | |||
* '''Sigma factor:''' [[SigA]] {{PubMed|xxxxxx}} {{PubMed|10572140}} | |||
* '''Regulation:''' | |||
** repressed by [[Rok]] [http://www.ncbi.nlm.nih.gov/sites/entrez/15743949 PubMed] | |||
** expressed under anaerobic conditions ([[ResD]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10809710 PubMed] | |||
** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10572140,17720793 PubMed] | |||
* '''Regulatory mechanism:''' | |||
** [[Rok]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15743949 PubMed] | |||
** [[ResD]]: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/10809710 PubMed] | |||
** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/10572140,17720793 PubMed] | |||
* '''Additional information:''' | |||
=Biological materials = | |||
* '''Mutant:''' | |||
* '''Expression vector:''' | |||
* '''lacZ fusion:''' | |||
* '''GFP fusion:''' | |||
* '''two-hybrid system:''' | |||
* '''Antibody:''' | |||
=Labs working on this gene/protein= | |||
=Your additional remarks= | |||
=References= | |||
<pubmed>10809709,10572140,,15743949,10809710,10572140,17720793, </pubmed> | |||
[[Category:Protein-coding genes]] | |||
Revision as of 20:13, 8 August 2012
- Description: antilisterial bacteriocin (subtilosin) production
| Gene name | albF |
| Synonyms | ywhN |
| Essential | no |
| Product | unknown |
| Function | antilisterial bacteriocin (subtilosin) production |
| Gene expression levels in SubtiExpress: albF | |
| MW, pI | 48 kDa, 5.42 |
| Gene length, protein length | 1278 bp, 426 aa |
| Immediate neighbours | albE, albG |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Categories containing this gene/protein
miscellaneous metabolic pathways, biosynthesis of antibacterial compounds
This gene is a member of the following regulons
AbrB regulon, ResD regulon, Rok regulon
The gene
Basic information
- Locus tag: BSU37420
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: peptidase M16 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P71006
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
<pubmed>10809709,10572140,,15743949,10809710,10572140,17720793, </pubmed>