NrdI: Difference between revisions
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU17370 nrdI] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU17370 nrdI] | ||
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/NrdI NrdI] | |||
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)]''' | ||
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
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* '''[[SubtInteract|Interactions]]:''' | * '''[[SubtInteract|Interactions]]:''' | ||
** [[NrdI]]-[[NrdF]] {{PubMed|23402532}} | |||
* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nrdI_1868617_1869009_1 nrdI] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nrdI_1868617_1869009_1 nrdI] {{PubMed|22383849}} | ||
* '''Sigma factor:''' [[SigA]] {{PubMed|16885274}} | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|16885274}} | ||
* '''Regulation:''' | * '''Regulation:''' | ||
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<pubmed> 17229208 </pubmed> | <pubmed> 17229208 </pubmed> | ||
==Original Publications== | ==Original Publications== | ||
<pubmed>16885274,8969495, 12682299 ,20525796 </pubmed> | '''Additional publications:''' {{PubMed|23402532}} | ||
<pubmed>16885274,8969495, 12682299 ,20525796</pubmed> | |||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 13:42, 14 February 2013
- Description: flavodoxin, ribonucleoside-diphosphate reductase
| Gene name | nrdI |
| Synonyms | ymaA |
| Essential | yes PubMed |
| Product | ribonucleoside-diphosphate reductase |
| Function | synthesis of deoxyribonucleoside triphosphates |
| Gene expression levels in SubtiExpress: nrdI | |
| Interactions involving this protein in SubtInteract: NrdI | |
| Metabolic function and regulation of this protein in SubtiPathways: Nucleotides (regulation) | |
| MW, pI | 14 kDa, 8.58 |
| Gene length, protein length | 390 bp, 130 aa |
| Immediate neighbours | ymzA, nrdE |
| Gene sequence (+200bp) | Protein sequence |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Categories containing this gene/protein
biosynthesis/ acquisition of nucleotides, essential genes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU17370
Phenotypes of a mutant
essential PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: nrdI family (according to Swiss-Prot)
- Paralogous protein(s): YosM
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 1RLJ
- UniProt: P50618
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
<pubmed> 17229208 </pubmed>
Original Publications
Additional publications: PubMed <pubmed>16885274,8969495, 12682299 ,20525796</pubmed>