Revision as of 13:51, 8 December 2010

Description: tmRNA

Gene name	ssrA
Synonyms
Essential	no
Product	tmRNA
Function	trans-translation
Gene length	bp
Immediate neighbours	yvaG, smpB
Gene sequence (+200bp)
Genetic context This image was kindly provided by SubtiList

Categories containing this gene/protein

translation, ncRNA

This gene is a member of the following regulons

The gene

Basic information

Locus tag:

Phenotypes of a mutant

Database entries

DBTBS entry: no entry

SubtiList entry: [1]

Structure:

Additional information

Expression and regulation

Operon:

Sigma factor:

Regulation:

Regulatory mechanism:

Additional information:

Biological materials

Mutant: GP323 (cat), available in the Stülke lab

Expression vector:

lacZ fusion:

GFP fusion:

two-hybrid system:

Antibody:

Labs working on this gene/RNA

Chet Price, Davis, USA homepage

Your additional remarks

References

Reviews

Original Publications

@@ Line 1: / Line 1: @@
-* '''Description:''' 6S RNA<br/><br/>
+* '''Description:''' tmRNA<br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''bsrB''
+|''ssrA''
 |-
 |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || 6S RNA
+|style="background:#ABCDEF;" align="center"| '''Product''' || tmRNA
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || antagonist of [[SigA]]
+|style="background:#ABCDEF;" align="center"|'''Function''' || trans-translation
 |-
-|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  203 bp
+|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  bp
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yocI]]'', ''[[azoR1]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvaG]]'', ''[[smpB]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt     Gene sequence      (+200bp)   ]'''
+|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ssrA_nucleotide.txt     Gene sequence      (+200bp)   ]'''
 |-
-|colspan="2" | '''Genetic context''' <br/> [[Image:BsrB_context.gif]]
+|colspan="2" | '''Genetic context''' <br/> [[Image:ssrA_context.gif]]
+ <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
 |}
@@ Line 26: / Line 28: @@
 __TOC__
-<br/><br/>
+<br/><br/><br/><br/><br/><br/>
-<br/><br/><br/><br/><br/>
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[sigma factors and their control]]}},
+{{SubtiWiki category|[[translation]]}},
 {{SubtiWiki category|[[ncRNA]]}}
@@ Line 46: / Line 47: @@
 === Database entries ===
-* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/bsrB.html]
+* '''DBTBS entry:''' no entry
-* '''SubtiList entry:''' no entry
+* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00097]
 * '''Structure:'''
 === Additional information===
@@ Line 59: / Line 59: @@
 =Expression and regulation=
-* '''Operon:''' ''bsrB'' [http://www.ncbi.nlm.nih.gov/sites/entrez/11886746 PubMed]
+* '''Operon:'''
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
-* '''Regulation:''' expressed during vegetative growth[http://www.ncbi.nlm.nih.gov/sites/entrez/11886746 PubMed]
+* '''Regulation:'''
 * '''Regulatory mechanism:'''
@@ Line 71: / Line 71: @@
 =Biological materials =
-* '''Mutant:'''
+* '''Mutant:''' GP323 (cat), available in the [[Stülke]] lab
 * '''Expression vector:'''
@@ Line 77: / Line 77: @@
 * '''lacZ fusion:'''
+* '''GFP fusion:'''
+* '''two-hybrid system:'''
+* '''Antibody:'''
 =Labs working on this gene/RNA=
-* Kouji Nakamura, Tsukuba, University, Japan
+* [[Chet Price]], Davis, USA [http://foodscience.ucdavis.edu/price_lab/pricelab.html homepage]
-* [[Roland Hartmann]], Philipps-Universität Marburg, Marburg, Germany, [http://www.uni-marburg.de/fb16/ipc/ag_hartmann homepage]
 =Your additional remarks=
@@ Line 87: / Line 91: @@
 =References=
-<pubmed>15811922,,11886746 15811922, </pubmed>
+==Reviews==
+<pubmed> 12730326,  19609260 </pubmed>
+==Original Publications==
+<pubmed>18977770,11395451,17369301,,10881189,14766921, </pubmed>
 [[Category:small RNA]]