Jump to content

YrdD/3: Difference between revisions

From SubtiWiki
← Older edit
Sroppel (talk | contribs)
72,719 edits
No edit summary
No edit summary
 
(14 intermediate revisions by 5 users not shown)
Line 1: Line 1:
* '''Description:''' unknown <br/><br/>
* '''Description:''' part of the yrdD pseudogene <br/><br/>


{| align="right" border="1" cellpadding="2"  
{| align="right" border="1" cellpadding="2"  
Line 14: Line 14:
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|-
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 5 kDa, 10.21 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26750 yrdD/3]
|-
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 147 bp, 49 aa
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || -, - 
|-
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cypA]]'', ''[[yrdC]]''
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 135 bp, -
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrdD/2]]'', ''[[yrdC]]''
|-
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yrdD_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yrdD_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
Line 25: Line 27:
|colspan="2" | '''Genetic context''' <br/> [[Image:yrdD_context.gif]]
|colspan="2" | '''Genetic context''' <br/> [[Image:yrdD_context.gif]]
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrdD_2732747_2732881_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yrdD/3_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26750]]
|-
|-
|}
|}


__TOC__
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>


<br/><br/>
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[pseudogenes]]}}
= This gene is a member of the following [[regulons]] =


=The gene=
=The gene=
Line 36: Line 52:
=== Basic information ===
=== Basic information ===


* '''Coordinates:'''
* '''Locus tag:''' BSU26750


===Phenotypes of a mutant ===
===Phenotypes of a mutant ===


=== Database entries ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU26750&redirect=T BSU26750]


* '''DBTBS entry:''' no entry
* '''DBTBS entry:''' no entry
Line 47: Line 64:


=== Additional information===
=== Additional information===




Line 71: Line 90:
* '''Effectors of protein activity:'''
* '''Effectors of protein activity:'''


* '''Interactions:'''
* '''[[SubtInteract|Interactions]]:'''


* '''Localization:'''
* '''[[Localization]]:'''


=== Database entries ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU26750&redirect=T BSU26750]


* '''Structure:'''
* '''Structure:'''
Line 81: Line 101:
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O07946 O07946]
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O07946 O07946]


* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU26750 BSU26750]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU26750]


* '''E.C. number:'''
* '''E.C. number:'''
Line 91: Line 111:
* '''Operon:'''  
* '''Operon:'''  


* '''[[Sigma factor]]:'''  
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrdD_2732747_2732881_-1 yrdD/3] {{PubMed|22383849}}
 
* '''Sigma factor:'''  


* '''Regulation:'''  
* '''Regulation:'''  
Line 97: Line 119:
* '''Regulatory mechanism:'''  
* '''Regulatory mechanism:'''  


* '''Additional information:'''  
* '''Additional information:'''


=Biological materials =
=Biological materials =
Line 118: Line 140:


=References=
=References=
[[Category:Pseudogenes]]

Latest revision as of 14:19, 2 April 2014

  • Description: part of the yrdD pseudogene

Gene name yrdD
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yrdD/3
MW, pI -, -
Gene length, protein length 135 bp, -
Immediate neighbours yrdD/2, yrdC
Gene sequence (+200bp) Protein sequence
Genetic context
This image was kindly provided by SubtiList
Expression at a glance   PubMed
File:YrdD/3 expression.png
























Categories containing this gene/protein

pseudogenes

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU26750

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Retrieved from "https://subtiwiki.uni-goettingen.de/wiki/index.php?title=YrdD/3&oldid=201068"