Jump to content

YvrHb: Difference between revisions

From SubtiWiki
Sroppel (talk | contribs)
No edit summary
No edit summary
 
(25 intermediate revisions by 8 users not shown)
Line 1: Line 1:
* '''Description:''' two-component response regulator <br/><br/>
{{#bank: YvrHb}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yvrHb''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yvrH ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || two-component response regulator
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation cell surface maintenance
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 26.6 kDa, 5.23
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 714 bp, 237 amino acids
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvrHa]]'', ''[[yvrG]]''
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt    Gene sequence      (+200bp)  ]'''
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_protein.txt Protein sequence]'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:YvrHa_yvrHb_context.GIF]]
|-
|}
__TOC__
<br/><br/>
=The gene=
=== Basic information ===
* '''Locus tag:'''
===Phenotypes of a mutant ===
unusual autolysis and higher susceptibility to cell envelope antibiotics (bacitracin, aztreonam, cefepime, fosfomycin)  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
=== Database entries ===
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' no entry
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' transcription activator  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
* '''Protein family:''' OmpR family
* '''Paralogous protein(s):'''
=== The YvrHb regulon ===
subject to positive control: ''[[dltA]]-[[dltB]]-[[dltC]]-[[dltD]]-[[dltE]], [[sigX]]-[[rsiX]], [[sunA]], [[sunT]]-[[bdbA]]-[[yolJ]]-[[bdbB]], [[wapA]]-[[yxxG]], [[wprA]], [[yvrI]]-[[yvrHa]]''  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
subject to negative control: ''[[lytA]]-[[lytB]]-[[lytC]]''  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:''' 
* '''Modification:''' phosphorylation (Asp) by [[YvrG]]  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''Interactions:''' YvrG-[[YvrHb]]  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
* '''Localization:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''Structure:'''
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P94504 P94504]
* '''KEGG entry:''' no entry
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''[[Sigma factor]]:'''
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>16306698, </pubmed>
# Serizawa M, Kodama K, Yamamoto H, Kobayashi K, Ogasawara N, Sekiguchi J. (2005) Functional analysis of the YvrGHb two-component system of ''Bacillus subtilis'': identification of the regulated genes by DNA microarray and northern blot analyses. ''Biosci. Biotechnol. Biochem.'' '''69:''' 2155-2169. [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Latest revision as of 11:11, 13 June 2014