Jump to content

DnaN: Difference between revisions

From SubtiWiki
No edit summary
 
(96 intermediate revisions by 11 users not shown)
Line 1: Line 1:
* '''Description:''' write here <br/><br/>
{{#bank: DnaN}}
 
{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''dnaN''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''dnaG, dnaK ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' ||
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || DNA polymerase III (beta subunit) (EC 2.7.7.7)
|-
|style="background:#ABCDEF;" align="center"|'''Function''' ||
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 41 kDa, 4.718 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1134 bp, 378 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' ||
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/dnaN_nucleotide.txt    Gene sequence      (+200bp)  ]'''
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/dnaN_protein.txt Protein sequence]'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:dnaN_context.gif]]
|-
|}
 
__TOC__
 
<br/><br/>
 
=The gene=
 
=== Basic information ===
 
* '''Coordinates:'''
 
===Phenotypes of a mutant ===
 
=== Database entries ===
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dnaN.html]
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10066]
 
=== Additional information===
 
 
=The protein=
 
=== Basic information/ Evolution ===
 
* '''Catalyzed reaction/ biological activity:'''
 
* '''Protein family:'''
 
* '''Paralogous protein(s):'''
 
=== Extended information on the protein ===
 
* '''Kinetic information:'''
 
* '''Domains:'''
 
* '''Modification:'''
 
* '''Cofactor(s):'''
 
* '''Effectors of protein activity:'''
 
* '''Interactions:''' [[DnaA]]-[[YabA]]-[[DnaN]] [http://www.ncbi.nlm.nih.gov/sites/entrez/12060778 PubMed]
 
* '''Localization:'''
 
=== Database entries ===
 
* '''Structure:'''
 
* '''Swiss prot entry:'''
 
* '''KEGG entry:'''
 
* '''E.C. number:'''
 
=== Additional information===
 
=Expression and regulation=
 
* '''Operon:''' ''[[dnaA]]-[[dnaN]]''  [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
 
* '''Sigma factor:''' [[SigA]]  [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
 
* '''Regulation:''' negatively controlled by [[DnaA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2168872 PubMed] and [[Spo0A]]  [http://www.ncbi.nlm.nih.gov/sites/entrez/14651647 PubMed]
 
* '''Regulatory mechanism:'''
 
* '''Additional information:'''
 
=Biological materials =
 
* '''Mutant:'''
 
* '''Expression vector:'''
       
* '''lacZ fusion:'''
 
* '''GFP fusion:'''
 
* '''two-hybrid system:'''
 
* '''Antibody:'''
 
=Labs working on this gene/protein=
[[Philippe Noirot]], Jouy-en-Josas, France [http://locus.jouy.inra.fr/cms/index.php?id=18 homepage]
 
=Your additional remarks=
 
=References=
 
# Noirot-Gros et al. (2002) An expanded view of bacterial DNA replication. ''Proc. Natl. Acad. Sci. USA'' '''99:''' 8342-8347. [http://www.ncbi.nlm.nih.gov/sites/entrez/12060778 PubMed]
# Noirot-Gros et al. (2002) Functional dissection of YabA, a negative regulator of DNA replication initiation in Bacillus Title ''Proc. Natl. Acad. Sci. USA'' '''103:''' 2368-2373. [http://www.ncbi.nlm.nih.gov/sites/entrez/16461910 PubMed]
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Latest revision as of 11:27, 3 September 2015