Latest revision as of 14:19, 2 April 2014

Description: part of the yrdD pseudogene

Gene name	yrdD
Synonyms
Essential	no
Product	unknown
Function	unknown
*Gene expression levels in SubtiExpress*: yrdD/3
MW, pI	-, -
Gene length, protein length	135 bp, -
Immediate neighbours	yrdD/2, yrdC
Gene sequence (+200bp)	Protein sequence
Genetic context This image was kindly provided by SubtiList
Expression at a glance PubMed File:YrdD/3 expression.png

Categories containing this gene/protein

pseudogenes

This gene is a member of the following regulons

The gene

Basic information

Locus tag: BSU26750

Phenotypes of a mutant

Database entries

BsubCyc: BSU26750

DBTBS entry: no entry

SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

Catalyzed reaction/ biological activity:

Protein family:

Paralogous protein(s):

Extended information on the protein

Kinetic information:

Domains:

Modification:

Cofactor(s):

Effectors of protein activity:

Interactions:

Localization:

Database entries

BsubCyc: BSU26750

Structure:

Swiss prot entry: O07946

KEGG entry: [2]

E.C. number:

Additional information

Expression and regulation

Operon:

Expression browser: yrdD/3 PubMed

Sigma factor:

Regulation:

Regulatory mechanism:

Additional information:

Biological materials

Mutant:

Expression vector:

lacZ fusion:

GFP fusion:

two-hybrid system:

Antibody:

Labs working on this gene/protein

Your additional remarks

References

@@ Line 1: / Line 1: @@
-* '''Description:''' write here <br/><br/>
+* '''Description:''' part of the yrdD pseudogene <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 8: / Line 8: @@
 |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 |-
-|style="background:#ABCDEF;" align="center"| '''Essential''' ||
+|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' ||
+|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 5 kDa, 10.21
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26750 yrdD/3]
 |-
-|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 147 bp, 49 aa
+|style="background:#ABCDEF;" align="center"| '''MW, pI''' || -, -
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' ||
+|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 135 bp, -
+|-
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrdD/2]]'', ''[[yrdC]]''
 |-
 |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/yrdD_nucleotide.txt     Gene sequence      (+200bp)   ]'''
@@ Line 24: / Line 26: @@
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yrdD_context.gif]]
+ <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
+|-
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrdD_2732747_2732881_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yrdD/3_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26750]]
 |-
 |}
 __TOC__
+<br/><br/><br/><br/>
+<br/><br/><br/><br/>
+<br/><br/><br/><br/>
+<br/><br/><br/><br/>
+<br/><br/><br/><br/>
 <br/><br/>
+= [[Categories]] containing this gene/protein =
+{{SubtiWiki category|[[pseudogenes]]}}
+= This gene is a member of the following [[regulons]] =
 =The gene=
@@ Line 35: / Line 52: @@
 === Basic information ===
-* '''Coordinates:'''
+* '''Locus tag:''' BSU26750
 ===Phenotypes of a mutant ===
 === Database entries ===
+* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU26750&redirect=T BSU26750]
-* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yrdD.html]
+* '''DBTBS entry:''' no entry
 * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12284]
 === Additional information===
@@ Line 70: / Line 90: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:'''
+* '''[[Localization]]:'''
 === Database entries ===
+* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU26750&redirect=T BSU26750]
 * '''Structure:'''
-* '''Swiss prot entry:'''
+* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O07946 O07946]
-* '''KEGG entry:'''
+* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU26750]
 * '''E.C. number:'''
@@ Line 89: / Line 110: @@
 * '''Operon:'''
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrdD_2732747_2732881_-1 yrdD/3] {{PubMed|22383849}}
 * '''Sigma factor:'''
@@ Line 96: / Line 119: @@
 * '''Regulatory mechanism:'''
 * '''Additional information:'''
 =Biological materials =
@@ Line 118: / Line 141: @@
 =References=
-# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
+[[Category:Pseudogenes]]