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New page: * '''Description:''' write here <br/><br/> {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''ypuH'' |- |style="background:#ABC...
 
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* '''Description:''' write here <br/><br/>
{{#bank: scpB}}
* '''Description:''' part of the [[condensin]] complex, chromosomal origin condensation and segregation <br/><br/>


{| align="right" border="1" cellpadding="2"  
{| align="right" border="1" cellpadding="2"  
|-
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ypuH''
|''scpB ''
|-
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ypuH''
|-
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' ||  
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes {{PubMed|24440399}}
|-
|-
|style="background:#ABCDEF;" align="center"| '''Product''' ||  
|style="background:#ABCDEF;" align="center"| '''Product''' || DNA segregation and condensation protein
|-
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|style="background:#ABCDEF;" align="center"|'''Function''' || segregation of replication origins
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU23210 scpB]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=ScpB ScpB]
|-
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 4.25   
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 4.25   
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 591 bp, 197 aa  
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 591 bp, 197 aa  
|-
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' ||  
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypuI]]'', ''[[scpA]]''
|-
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ypuH_nucleotide.txt    Gene sequence     (+200bp)  ]'''
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU23210 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU23210 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU23210 DNA_with_flanks]
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/ypuH_protein.txt Protein sequence]'''
|-
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ypuH_context.gif]]
|colspan="2" | '''Genetic context''' <br/> [[Image:ypuH_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spcB_2425248_2425841_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:scpB_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU23210]]
|-
|-
|}
|}


__TOC__
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[DNA condensation/ segregation]]}},
{{SubtiWiki category|[[essential genes]]}}


<br/><br/>
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[stringent response]]}}


=The gene=
=The gene=
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=== Basic information ===
=== Basic information ===


* '''Coordinates:'''
* '''Locus tag:''' BSU23210


===Phenotypes of a mutant ===
===Phenotypes of a mutant ===
* essential {{PubMed|24440399}}
* ''[[scpB]]'' mutants are not viable on complex medim that allow rapid growth, but they are viable under conditions of slow growth {{PubMed|24440399,24440393}}


=== Database entries ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU23210&redirect=T BSU23210]


* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ypuH.html]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ypuGHI.html]


* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10525]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10525]


=== Additional information===
=== Additional information===


=The protein=
=The protein=
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* '''Catalyzed reaction/ biological activity:'''  
* '''Catalyzed reaction/ biological activity:'''  


* '''Protein family:'''
* '''Protein family:''' scpB family (according to Swiss-Prot)


* '''Paralogous protein(s):'''
* '''Paralogous protein(s):'''
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* '''Kinetic information:'''
* '''Kinetic information:'''


* '''Domains:'''  
* '''[[Domains]]:'''  


* '''Modification:'''
* '''Modification:'''


* '''Cofactor(s):'''
* '''[[Cofactors]]:'''


* '''Effectors of protein activity:'''
* '''Effectors of protein activity:'''


* '''Interactions:'''
* '''[[SubtInteract|Interactions]]:'''  
** part of the [[condensin]] complex {{PubMed|24440399,24440393}}
** forms dimers {{PubMed|22385855}}
** [[ScpB]]-[[Smc]] {{PubMed|22385855,12100548}}, this interaction takes place only in the presence of [[ScpA]]  {{PubMed|22385855}}
** [[ScpA]]-[[ScpB]] {{PubMed|23353789,12100548}}


* '''Localization:'''
* '''[[Localization]]:'''  
** nucleoid (Multiple) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
** the [[condensin]] ([[Smc]])2-[[ScpA]]-[[ScpB]] complex forms two bipolar assemblies on the chromosome, one in each cell half, localization depends on [[Spo0J]] {{PubMed|24440393,23475963}}


=== Database entries ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU23210&redirect=T BSU23210]


* '''Structure:'''
* '''Structure:'''
** [http://www.pdb.org/pdb/explore/explore.do?structureId=4I98 4I98] (complex between [[ScpA]] (aa 1-160)-[[ScpB]] (aa 1-183) {{PubMed|23353789}}


* '''Swiss prot entry:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P35155 P35155]


* '''KEGG entry:'''
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU23210]


* '''E.C. number:'''
* '''E.C. number:'''
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=Expression and regulation=
=Expression and regulation=


* '''Operon:'''  
* '''Operon:''' ''[[scpA]]-[[scpB]]-[[ypuI]]'' {{PubMed|7934830}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spcB_2425248_2425841_-1 scpB] {{PubMed|22383849}}


* '''Sigma factor:'''  
* '''[[Sigma factor]]:'''  


* '''Regulation:'''  
* '''Regulation:'''  
** [[RelA]] dependent downregulation (Class I) during stringent response {{PubMed|11948165}}


* '''Regulatory mechanism:'''  
* '''Regulatory mechanism:'''  


* '''Additional information:'''  
* '''Additional information:'''


=Biological materials =
=Biological materials =
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=References=
=References=
==Reviews==
<pubmed> 22933559 22934648 24118085 </pubmed>
== Original publications ==
<pubmed>12100548,12065423,12421306,22385855, 16479537, 19450516 12897137 7934830 11948165  23353789 24440399,24440393 25071173, 25557547 25951515 26253537 23475963 26295962</pubmed>


# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
[[Category:Protein-coding genes]]

Latest revision as of 17:25, 4 January 2016

scpB

  • Description: part of the condensin complex, chromosomal origin condensation and segregation

Gene name scpB
Synonyms ypuH
Essential yes PubMed
Product DNA segregation and condensation protein
Function segregation of replication origins
Gene expression levels in SubtiExpress: scpB
Interactions involving this protein in SubtInteract: ScpB
MW, pI 21 kDa, 4.25
Gene length, protein length 591 bp, 197 aa
Immediate neighbours ypuI, scpA
Sequences Protein DNA DNA_with_flanks
Genetic context
This image was kindly provided by SubtiList
Expression at a glance   PubMed















Categories containing this gene/protein

DNA condensation/ segregation, essential genes

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU23210

Phenotypes of a mutant

  • essential PubMed
  • scpB mutants are not viable on complex medim that allow rapid growth, but they are viable under conditions of slow growth PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: scpB family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

<pubmed> 22933559 22934648 24118085 </pubmed>

Original publications

<pubmed>12100548,12065423,12421306,22385855, 16479537, 19450516 12897137 7934830 11948165 23353789 24440399,24440393 25071173, 25557547 25951515 26253537 23475963 26295962</pubmed>

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