Jump to content

DivIVA: Difference between revisions

From SubtiWiki
Dtoedter (talk | contribs)
No edit summary
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
* '''Description:''' curvature sensitive membrane binding protein that recruits other proteins to the poles and the division septum, cell-division initiation protein (septum placement), part of the Min system (with [[MinC]], [[MinD]], [[MinJ]]), [[Noc]] and the Min system ensure the efficient utilization of the division site at midcell in by ensuring [[FtsZ|Z ring]] placement  <br/><br/>
{{#bank: DivIVA}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''divIVA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ylmJ ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || cell-division initiation protein
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || septum placement
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15420 divIVA]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=DivIVA DivIVA]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 4.846 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 492 bp, 164 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ylmH]]'', ''[[ileS]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15420 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:divIVA_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=divIVA_1612521_1613015_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:divIVA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15420]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[cell division]]}},
{{SubtiWiki category|[[membrane proteins]]}},
{{SubtiWiki category|[[phosphoproteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[Spo0A regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU15420
===Phenotypes of a mutant ===
* Deletion of ''divIVA'' leads to filamentation and polar divisions that in turn cause a minicell phenotype. [http://www.ncbi.nlm.nih.gov/sites/entrez/9219999 PubMed]
* A ''divIVA'' mutant has a severe [[sporulation]] defect. [http://www.ncbi.nlm.nih.gov/sites/entrez/11445541 PubMed]
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15420&redirect=T BSU15420]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/divIVA.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11835]
=== Additional information===
Filamentation is suppressed by mutations in minCD [http://www.ncbi.nlm.nih.gov/sites/entrez/9045828 PubMed].
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
** curvature sensitive membrane binding protein that recruits other proteins to the poles and the division septum
** DivIVA is required for polar localisation of [[MinC]]-[[MinD]] via [[MinJ]]. [http://www.ncbi.nlm.nih.gov/sites/entrez/19019154 PubMed]
** It also recruits [[RacA]] to the distal pole of the prespore [http://www.ncbi.nlm.nih.gov/sites/entrez/12493822 PubMed].
** DivIVA may anchor [[SpoIIE]] briefly to the assembling polar septum before [[SpoIIE]] is subsequently released into the forespore membrane and recaptured at the polar septum {{PubMed|25101664}}
** required for the compartment-specific activation of [[SigF]] {{PubMed|25101664}}
* '''Protein family:''' gpsB family (according to Swiss-Prot)
* '''Paralogous protein(s):''' [[GpsB]]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''[[Domains]]:'''
** the first 60 amino acids constitute a conserved lipid binding domain. [http://www.ncbi.nlm.nih.gov/sites/entrez/19478798 PubMed]
** the C-terminal domain is less conserved
** multimerisation involves two coiled-coil motifs, one in the lipid binding domain, and the other one being present in the helical C-terminal domain {{PubMed|18388125}} {{PubMed|23264578}}
* '''Modification:'''
** phosphorylated on Arg-102 {{PubMed|22517742}}
** The ''Mycobacterium'' DivIVA homologue Wag31 is phosphorylated at T73 [http://www.ncbi.nlm.nih.gov/sites/entrez/15985609 PubMed]
** DivIVA from ''Streptococcus pneumoniae'' is phosphorylated at Threonine 201 by the Ser/Thr protein kinase Sktp1. [http://www.ncbi.nlm.nih.gov/sites/entrez/20453092 PubMed][http://www.ncbi.nlm.nih.gov/sites/entrez/22211696 PubMed]
* '''[[Cofactors]]:''' not known
* '''Effectors of protein activity:''' not known
* '''[[SubtInteract|Interactions]]:'''
** ([[MinC]]-[[MinD]])-[[MinJ]]-[[DivIVA]] {{PubMed|20352045}}, [[MinJ]] binds to the N-terminal lipid-binding domain of [[DivIVA]] {{PubMed|23264578}}
** [[DivIVA]]-[[RacA]], [[RacA]] binds to the C-terminal domain of [[DivIVA]] {{PubMed|23264578}}
** [[DivIVA]]-[[DivIVA]] {{PubMed|23264578}}
** [[Maf]]-[[DivIVA]] {{PubMed|21564336}}
** [[DivIVA]]-[[ComN]] {{PubMed|22582279}}
** [[DivIVA]]-[[SecA]] {{PubMed|24592260}}
** [[DivIVA]]-[[SpoIIE]] {{PubMed|25101664}}
* '''[[Localization]]:'''
** DivIVA forms a ring underneath the invaginating membrane at the site of cell division and is enriched at both cell poles [http://www.ncbi.nlm.nih.gov/sites/entrez/9219999 PubMed].
** forms rings at the division septum and patches at the cell poles {{PubMed|22108385}}
** membrane targeting requires [[SecA]] {{PubMed|24592260}}
** assembles into a ring-like structure at the polar septum during [[sporulation]] {{PubMed|25101664}}
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15420&redirect=T BSU15420]
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=2WUJ 2WUJ] (N-terminal domain) {{PubMed|20502438}}
* '''UniProt:''' [http://www.uniprot.org/uniprot/P71021 P71021]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU15420]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''divIVA'' [http://www.ncbi.nlm.nih.gov/sites/entrez/16420366 PubMed]
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=divIVA_1612521_1613015_1 divIVA] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
** repressed under conditions that trigger sporulation ([[Spo0A]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/14651647 PubMed]
** constitutively expressed {{PubMed|23701187}}
* '''Regulatory mechanism:'''
** [[Spo0A]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/14651647 PubMed]
* '''Additional information:'''
** number of protein molecules per cell (minimal medium with glucose and ammonium): 1595 {{PubMed|24696501}}
** number of protein molecules per cell (complex medium with amino acids, without glucose): 3553 {{PubMed|24696501}}
=Biological materials =
* '''Mutant:'''
** 4041 (''divIVA''::''tet''), available in [[Leendert Hamoen]]'s, [[Jörg Stülke]]'s, and [[Sven Halbedel]] 's lab
** GP1482 (chromosomal ''divIVA''-Strep fusion, ''aphA''3), purification from ''B. subtilis'', for [[SPINE]], available in [[Jörg Stülke]]'s lab'''
* '''Expression vector:'''
** DivIVA-Strep available [http://www.rki.de/DE/Content/Institut/OrgEinheiten/Abt1/FG11/AG_LM.html here]
** pGP1497 (N-terminal Strep-tag fused to C-terminus of ''divIVA'', TEV-site purification from ''E. coli'', in [[pGP172]]), available in [[Jörg Stülke]]'s lab       
* '''lacZ fusion:'''
* '''GFP fusion:''' divIVA-gfp fusions available from the [http://subtiwiki.uni-goettingen.de/wiki/index.php/Leendert_Hamoen Hamoen] Lab
* '''two-hybrid system:''' ''B. pertussis'' adenylate cyclase-based bacterial two hybrid system ([[BACTH]]), available in [[Sven Halbedel]]'s and [[Jörg Stülke]]'s labs
* '''Antibody:''' A polyclonal anti-DivIVA antiserum generated in rabbit is described here {{PubMed|11445541}}.
=Labs working on this gene/protein=
[[Leendert Hamoen]], Centre for Bacterial Cell Biology, Newcastle upon Tyne, United Kingdom [http://www.ncl.ac.uk/camb/staff/profile/l.hamoen]
[[Imrich Barak]], Slovak Academy of Science, Bratislava, Slovakia [http://imb.savba.sk/~barak/ homepage]
[[Sven Halbedel]], Robert Koch Institute [http://www.rki.de/DE/Content/Institut/OrgEinheiten/Abt1/FG11/AG_LM.html homepage]
=Your additional remarks=
=References=
==Reviews==
<pubmed> 19654604, 19884039 22722244 23182676 </pubmed>
==Original Publications==
<pubmed>22582279, 19654604, 19666580,9219999,19019154,15554965, 12368265,11445541,10835369,12511520,14651647, 19478798 ,19429628, 11445541, 9219999, 9045828 20352045 20502438 11886553 21564336 22108385 22457634 22517742 22661688 23264578 23701187 23927765 24391905 24592260 24600441 25101664 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 15:54, 10 April 2015