Jump to content

RpmGC: Difference between revisions

From SubtiWiki
Created page with "* '''Description:''' alternative ribosomal protein , replaces RpmG under conditions of zinc limitation <br/><br/> {| align="right" border="1" cellpadding="2" |- ..."
 
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
* '''Description:''' alternative [[ribosomal protein]] , replaces [[L33|RpmG]] under conditions of zinc limitation <br/><br/>
{{#bank: RpmGC}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ytiA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''S903''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || accessory [[ribosomal protein]]
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || translation
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30700 ytiA]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YtiA YtiA]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' ||
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' ||
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqjL]]'', ''[[rnz]]''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:RpmGC.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmEB_3138978_3139226_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ytiA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30700]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[translation]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[Zur regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' none
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:'''
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' no entry
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):''' [[RpmGA]], [[RpmGB]]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
=== Database entries ===
* '''BsubCyc:'''
* '''Structure:'''
* '''UniProt:'''
* '''KEGG entry:'''
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[rpmGC]]'' {{PubMed|22383849}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=S903_2477758_2477958_-1 rpmGC] {{PubMed|22383849}}
* '''[[Sigma factor]]:''' 
* '''Regulation:''' 
** induced by zinc starvation ([[Zur]])
* '''Regulatory mechanism:'''
** [[Zur]]: transcription repression in  the presence of zinc
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
* [[John Helmann]]
=Your additional remarks=
=References=
<pubmed> </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 16:46, 6 February 2015