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SpoVAEB: Difference between revisions

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* '''Description:''' spore germinant protein, essential for the transport of the 1:1 chelate of pyridine-2,6-dicarboxylic acid (DPA(2,6)) and Ca(2+)<br/><br/>
{{#bank: SpoVAEB}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''spoVAEB''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|style="background:#ABCDEF;" align="center"| '''Product''' || spore germinant protein
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|style="background:#ABCDEF;" align="center"|'''Function''' || spore germination
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU23402 spoVAEB]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 12 kDa, 6.250
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 348 bp, 116 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[spoVAEA]]'', ''[[spoVAD]]''
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt    Gene sequence      (+200bp)  ]'''
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_protein.txt Protein sequence]'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:spoVAE_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}
__TOC__
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[germination]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigG regulon]]}},
{{SubtiWiki regulon|[[SpoVT regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU23402
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' no entry
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/C0H450 C0H450]
* '''KEGG entry:'''
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[spoVAA]]-[[spoVAB]]-[[spoVAC]]-[[spoVAD]]-[[spoVAEB]]-[[spoVAEA]]-[[spoVAF]]-[[lysA]]'' {{PubMed|7934830}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoVAEB_2440423_2440773_-1 spoVAEB] {{PubMed|22383849}}
* '''[[Sigma factor]]:''' [[SigG]] {{PubMed|15699190,1903432}}
* '''Regulation:'''
** expressed late during sporulation in the forespore ([[SigG]], [[SpoVT]]) {{PubMed|15699190,1903432,8755877}}
* '''Regulatory mechanism:'''
** [[SpoVT]]: transcription activation {{PubMed|8755877}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
* [[Peter Setlow]], University of Connecticut Health Center, USA
=Your additional remarks=
=References=
<pubmed>17573930,3114420,11751839,15451103,3926949,17158659,6432957,7934830 22328679 15699190,1903432,8755877</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:07, 2 April 2014