Jump to content

AnsR: Difference between revisions

From SubtiWiki
No edit summary
 
(5 intermediate revisions by 2 users not shown)
Line 1: Line 1:
* '''Description:''' transcription repressor of the ''[[ansA]]-[[ansB]]'' operon<br/><br/>
{{#bank: AnsR}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ansR''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator ([[Xre family]])
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || negative regulation of the ''[[ansA]]-[[ansB]]'' operon
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU23590 ansR]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/aspartate_asparagine.html Asp, Asn]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 13 kDa, 4.807 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 348 bp, 116 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ansA]]'', ''[[yqxK]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14291&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ansR_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ansR_2456990_2457340_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ansR_expression.png|500px]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/><br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[utilization of amino acids]]}},
{{SubtiWiki category|[[transcription factors and their control]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[AnsR regulon]]}}
=The [[AnsR regulon]]:=
* ** ''[[ansA]]-[[ansB]]-[[mleN]]-[[mleA]]'', ''[[ansR]]''
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU23590
===Phenotypes of a mutant ===
* the ''ansR'' mutation allows glutamate utilization of a ''[[rocG]] [[gudB]]'' mutant {{PubMed|21219666}}
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ansR.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10299]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/Q07683 Q07683]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU23590]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''ansR'' {{PubMed|8478318}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ansR_2456990_2457340_1 ansR] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:'''
** induced in the presence of asparagine ([[AnsR]]) {{PubMed|11914346}}
* '''Regulatory mechanism:'''
** [[AnsR]]: negative autoregulation {{PubMed|11914346}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:''' GP1152 (del tet) available in the [[Stülke]] lab
* '''Expression vector:'''
** expression of native ''ansR'' in ''B. subtilis'': pGP873 (in [[pBQ200]]), available in [[Stülke]] lab
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>8478318,11914346 ,21219666  </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 16:51, 7 June 2014