Jump to content

SteT: Difference between revisions

From SubtiWiki
← Older edit
No edit summary
No edit summary
 
(8 intermediate revisions by 3 users not shown)
Line 1: Line 1:
{{#bank: steT}}
* '''Description:''' serine/ threonine exchanger transporter <br/><br/>
* '''Description:''' serine/ threonine exchanger transporter <br/><br/>
{| align="right" border="1" cellpadding="2"  
{| align="right" border="1" cellpadding="2"  
Line 13: Line 14:
|style="background:#ABCDEF;" align="center"|'''Function''' || exchange of serine and threonine
|style="background:#ABCDEF;" align="center"|'''Function''' || exchange of serine and threonine
|-
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU12860 steT]
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU12860 steT]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=SteT SteT]'''
|-
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 46 kDa, 9.184   
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 46 kDa, 9.184   
Line 21: Line 24:
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykaA]]'', ''[[mhqA]]''
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykaA]]'', ''[[mhqA]]''
|-
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13143&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12860 DNA_with_flanks]
|-
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ykbA_context.gif]]
|colspan="2" | '''Genetic context''' <br/> [[Image:ykbA_context.gif]]
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykbA_1351375_1352691_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:steT_expression.png|500px]]
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykbA_1351375_1352691_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:steT_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU12860]]
|-
|-
|}
|}
Line 34: Line 37:
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/>
<br/><br/>


Line 56: Line 55:


=== Database entries ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU12860&redirect=T BSU12860]


* '''DBTBS entry:''' no entry
* '''DBTBS entry:''' no entry
Line 73: Line 73:


* '''Protein family:'''
* '''Protein family:'''
** [[APC superfamily of transport proteins|amino acid, polyamine, organocation (APC) superfamily of transporters]], [http://www.tcdb.org/search/result.php?tc=2.A.3 TC 2.A.3]


* '''Paralogous protein(s):'''
* '''Paralogous protein(s):'''
Line 93: Line 94:


=== Database entries ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU12860&redirect=T BSU12860]


* '''Structure:'''
* '''Structure:'''
Line 100: Line 102:
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU12860]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU12860]


* '''E.C. number:'''
* '''[http://www.tcdb.org/ T.C.] number:''' [http://www.tcdb.org/search/result.php?tc=2.A.3.8.12 2.A.3.8.12]


=== Additional information===
=== Additional information===
Line 110: Line 112:
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykbA_1351375_1352691_-1 steT] {{PubMed|22383849}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykbA_1351375_1352691_-1 steT] {{PubMed|22383849}}


* '''Sigma factor:'''  
* '''[[Sigma factor]]:'''  


* '''Regulation:''' expression activated by glucose (4.2 fold) [http://www.ncbi.nlm.nih.gov/pubmed/12850135 PubMed]   
* '''Regulation:''' expression activated by glucose (4.2 fold) [http://www.ncbi.nlm.nih.gov/pubmed/12850135 PubMed]   
Line 137: Line 139:


=References=
=References=
 
<pubmed>17344220  12850135, 19419962 20610400</pubmed>
 
<pubmed>17344220  12850135, 19419962 </pubmed>


[[Category:Protein-coding genes]]
[[Category:Protein-coding genes]]

Latest revision as of 15:09, 4 August 2016

steT

  • Description: serine/ threonine exchanger transporter

Gene name steT
Synonyms ykbA
Essential no
Product serine/ threonine exchanger transporter
Function exchange of serine and threonine
Gene expression levels in SubtiExpress: steT
Metabolic function and regulation of this protein in SubtiPathways:
SteT
MW, pI 46 kDa, 9.184
Gene length, protein length 1314 bp, 438 aa
Immediate neighbours ykaA, mhqA
Sequences Protein DNA DNA_with_flanks
Genetic context
This image was kindly provided by SubtiList
Expression at a glance   PubMed















Categories containing this gene/protein

transporters/ other, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU12860

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon: steT
  • Regulation: expression activated by glucose (4.2 fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

<pubmed>17344220 12850135, 19419962 20610400</pubmed>

Retrieved from "https://subtiwiki.uni-goettingen.de/wiki/index.php?title=SteT&oldid=209313"