Jump to content

PabA: Difference between revisions

From SubtiWiki
No edit summary
No edit summary
 
(10 intermediate revisions by 3 users not shown)
Line 1: Line 1:
* '''Description:''' para-aminobenzoate synthase (subunit B)/ anthranilate synthase (subunit II) <br/><br/>
{{#bank: PabA}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''pabA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''trpG, trpX ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || para-aminobenzoate synthase (subunit B)/ <br/>anthranilate synthase (subunit II) <br/>glutamine amidotransferase (subunit B) <br/>and anthranilate synthase (subunit II)
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of folate and tryptophan
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/PabA PabA]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/phenyl_tyr_tryp.html Phe, Tyr, Trp], [http://subtiwiki.uni-goettingen.de/pathways/folate_biosynthesis.html Folate]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 4.782 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 582 bp, 194 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pabB]]'', ''[[pabC]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11851&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:pabA_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}
__TOC__
<br/><br/><br/><br/><br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[biosynthesis/ acquisition of amino acids]]}},
{{SubtiWiki category|[[biosynthesis of cofactors]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[TRAP regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU00750
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/pabBAC-sul-folBK-yazB-yacF-lysS.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10138]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' Chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate (according to Swiss-Prot)
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:''' [[PabA]]-[[PabB]], [[PabA]]-[[TrpE]]
* '''[[Localization]]:'''
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P28819 P28819]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU00750]
* '''E.C. number:''' [http://www.expasy.org/enzyme/2.6.1.85 2.6.1.85]
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[pabB]]-[[pabA]]-[[pabC]]-[[sul]]-[[folB]]-[[folK]]-[[yazB]]-[[yacF]]-[[lysS]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/9084182 PubMed]
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=pabA_84290_84874_1 pabA] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/9084182 PubMed]
* '''Regulation:''' translation repressed by tryptophan ([[MtrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/9084182 PubMed]
* '''Regulatory mechanism:''' [[MtrB]]: translation termination [http://www.ncbi.nlm.nih.gov/sites/entrez/9084182 PubMed]
* '''Additional information:'''
** the ''[[pabA]]-[[pabC]]'' part of the mRNA is substantially stabilized upon depletion of [[Rny|RNase Y]] {{PubMed|21815947}}
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews==
<pubmed>16285852, 19385727</pubmed>
==Original Publications==
<big>''Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J''  </big>
<big>'''RNA processing in ''Bacillus subtilis'': identification of targets of the essential RNase Y.''' </big>
<big>Mol Microbiol. 2011 81(6): 1459-1473. </big>
[http://www.ncbi.nlm.nih.gov/pubmed/21815947 PubMed:21815947]
<pubmed>8647825,7515880,9084182,17114263  ,, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:11, 17 April 2014