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HemAT: Difference between revisions

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* '''Description:''' soluble chemotaxis receptor, heme-containing O(2) sensor protein <br/><br/>
{{#bank: HemAT}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''hemAT''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yhfV ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || haem-based aerotactic transducer
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|style="background:#ABCDEF;" align="center"|'''Function''' || movement towards oxygen
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 5.441 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1296 bp, 432 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhfU]]'', ''[[yhfW]]''
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12878&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:hemAT_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=hemAT_1112620_1113918_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:hemAT_expression.png|500px]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[motility and chemotaxis]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigD regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU10380
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/hemAT.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13066]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):''' heme
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
** forms clusters at the cell poles {{PubMed|21515776}}
=== Database entries ===
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1OR4 1OR4] (in cyano-liganded form),  [http://www.rcsb.org/pdb/explore.do?structureId=1OR6 1OR6]
* '''UniProt:''' [http://www.uniprot.org/uniprot/O07621 O07621]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU10380]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''hemAT'' {{PubMed|15033535}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=hemAT_1112620_1113918_-1 hemAT] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigD]] {{PubMed|15033535}}
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
** in minimal medium, HemAT is present with 19,000 +/- 3,900 molecules per cell {{PubMed|21515776}}
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
'''Additional publications:''' {{PubMed|22564695}}
<pubmed>10676961,16819829,11481493,15033535 21515776</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:49, 3 July 2015