QueC: Difference between revisions
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{{#bank: queC}} | |||
* '''Description:''' synthesis of the modified ribonucleotide queuosine <br/><br/> | * '''Description:''' synthesis of the modified ribonucleotide queuosine <br/><br/> | ||
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|style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification | |style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification | ||
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13720 queC] | |||
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 5.147 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 5.147 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykvI]]'', ''[[queD]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykvI]]'', ''[[queD]]'' | ||
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| | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU13720 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU13720 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU13720 DNA_with_flanks] | ||
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|colspan="2" | '''Genetic context''' <br/> [[Image:ykvJ_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ykvJ_context.gif]] | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=queC_1439448_1440107_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:queC_expression.png|500px]] | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=queC_1439448_1440107_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:queC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13720]] | ||
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|} | |} | ||
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<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/><br/><br/> | <br/><br/><br/><br/> | ||
<br/><br/> | <br/><br/> | ||
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=== Database entries === | === Database entries === | ||
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU13720&redirect=T BSU13720] | |||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
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=== Database entries === | === Database entries === | ||
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU13720&redirect=T BSU13720] | |||
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3BL5 3BL5] | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3BL5 3BL5] | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=queC_1439448_1440107_1 queC] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=queC_1439448_1440107_1 queC] {{PubMed|22383849}} | ||
* '''Sigma factor:''' | * '''[[Sigma factor]]:''' | ||
* '''Regulation:''' | * '''Regulation:''' | ||
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* '''Additional information:''' | * '''Additional information:''' | ||
** number of protein molecules per cell (minimal medium with glucose and ammonium): 158 {{PubMed|24696501}} | |||
** number of protein molecules per cell (complex medium with amino acids, without glucose): 469 {{PubMed|24696501}} | |||
=Biological materials = | =Biological materials = | ||
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=References= | =References= | ||
<pubmed>18491386,14660578,17384645 19285444 , 19354300 24003028 21410253,21375305 24663240 </pubmed> | |||
<pubmed>18491386,14660578,17384645 19285444 , 19354300 </pubmed> | |||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Latest revision as of 08:41, 11 November 2015
- Description: synthesis of the modified ribonucleotide queuosine
| Gene name | queC |
| Synonyms | ykvJ |
| Essential | no |
| Product | unknown |
| Function | tRNA modification |
| Gene expression levels in SubtiExpress: queC | |
| MW, pI | 24 kDa, 5.147 |
| Gene length, protein length | 657 bp, 219 aa |
| Immediate neighbours | ykvI, queD |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU13720
Phenotypes of a mutant
Database entries
- BsubCyc: BSU13720
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: queC family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU13720
- Structure: 3BL5
- UniProt: O31675
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- repressed in the presence of queuosine (preQ1 riboswitch) PubMed
- Regulatory mechanism:
- preQ1 riboswitch: transcriptional antitermination in the absence of queuosine PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
<pubmed>18491386,14660578,17384645 19285444 , 19354300 24003028 21410253,21375305 24663240 </pubmed>