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{{#bank: queC}}
* '''Description:''' synthesis of the modified ribonucleotide queuosine <br/><br/>
* '''Description:''' synthesis of the modified ribonucleotide queuosine <br/><br/>


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|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification
|style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13720 queC]
|-
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 5.147   
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 5.147   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykvI]]'', ''[[queD]]''
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykvI]]'', ''[[queD]]''
|-
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13245&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU13720 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU13720 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU13720 DNA_with_flanks]
|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:ykvJ_context.gif]]
|colspan="2" | '''Genetic context''' <br/> [[Image:ykvJ_context.gif]]
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=queC_1439448_1440107_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:queC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13720]]
|-
|-
|}
|}


__TOC__
__TOC__
 
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=== Database entries ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU13720&redirect=T BSU13720]


* '''DBTBS entry:''' no entry
* '''DBTBS entry:''' no entry
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=== Database entries ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU13720&redirect=T BSU13720]


* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3BL5 3BL5]
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3BL5 3BL5]
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=queC_1439448_1440107_1 queC] {{PubMed|22383849}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=queC_1439448_1440107_1 queC] {{PubMed|22383849}}


* '''Sigma factor:'''  
* '''[[Sigma factor]]:'''  


* '''Regulation:'''  
* '''Regulation:'''  
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* '''Additional information:'''
* '''Additional information:'''
** number of protein molecules per cell (minimal medium with glucose and ammonium): 158 {{PubMed|24696501}}
** number of protein molecules per cell (complex medium with amino acids, without glucose): 469 {{PubMed|24696501}}


=Biological materials =
=Biological materials =
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=References=
=References=
'''Additional publications:''' {{PubMed|21410253,21375305}}
<pubmed>18491386,14660578,17384645 19285444 , 19354300 24003028 21410253,21375305 24663240 </pubmed>
<pubmed>18491386,14660578,17384645 19285444 , 19354300 </pubmed>


[[Category:Protein-coding genes]]
[[Category:Protein-coding genes]]

Latest revision as of 08:41, 11 November 2015

queC

  • Description: synthesis of the modified ribonucleotide queuosine

Gene name queC
Synonyms ykvJ
Essential no
Product unknown
Function tRNA modification
Gene expression levels in SubtiExpress: queC
MW, pI 24 kDa, 5.147
Gene length, protein length 657 bp, 219 aa
Immediate neighbours ykvI, queD
Sequences Protein DNA DNA_with_flanks
Genetic context
This image was kindly provided by SubtiList
Expression at a glance   PubMed















Categories containing this gene/protein

translation

This gene is a member of the following regulons

preQ1 riboswitch

The gene

Basic information

  • Locus tag: BSU13720

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: queC family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Additional information:
    • number of protein molecules per cell (minimal medium with glucose and ammonium): 158 PubMed
    • number of protein molecules per cell (complex medium with amino acids, without glucose): 469 PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

<pubmed>18491386,14660578,17384645 19285444 , 19354300 24003028 21410253,21375305 24663240 </pubmed>

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