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YvrHb: Difference between revisions

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* '''Description:''' [[two-component systems|two-component]] response regulator <br/><br/>
{{#bank: YvrHb}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yvrHb''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yvrH ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || [[two-component systems|two-component]] response regulator
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation cell surface maintenance
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YvrHB YvrHB]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 26.6 kDa, 5.23
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 711 bp, 237 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvrG]]'', ''[[yvrHa]]''
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt    Gene sequence      (+200bp)  ]'''
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE_protein.txt Protein sequence]'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:YvrHa_yvrHb_context.GIF]]
|-
|}
__TOC__
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[transcription factors and their control]]}},
{{SubtiWiki category|[[phosphoproteins]]}}
= This gene is a member of the following [[regulons]] =
=The [[YvrHb regulon]]=
=The gene=
=== Basic information ===
* '''Locus tag:'''
===Phenotypes of a mutant ===
unusual autolysis and higher susceptibility to cell envelope antibiotics (bacitracin, aztreonam, cefepime, fosfomycin)  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
=== Database entries ===
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' no entry
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' transcription activator  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
* '''Protein family:''' OmpR family
* '''Paralogous protein(s):'''
=== The YvrHb regulon ===
subject to positive control: ''[[dltA]]-[[dltB]]-[[dltC]]-[[dltD]]-[[dltE]], [[sigX]]-[[rsiX]], [[sunA]], [[sunT]]-[[bdbA]]-[[yolJ]]-[[bdbB]], [[wapA]]-[[yxxG]], [[wprA]], [[yvrI]]-[[yvrHa]]''  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
subject to negative control: ''[[lytA]]-[[lytB]]-[[lytC]]''  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:''' 
* '''Modification:''' phosphorylation (Asp) by [[YvrG]]  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
* '''Cofactor(s):'''
* '''Effectors of protein activity:''' phosphorylation likely affects DNA-binding activity
* '''[[SubtInteract|Interactions]]:'''
** [[YvrG]]-[[YvrHb]]  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
* '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''Structure:'''
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P94504 P94504]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU33220]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''[[Sigma factor]]:'''
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>10094672,18820022,,16306698, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 11:11, 13 June 2014