PdaC: Difference between revisions
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{{#bank: pdaC}} | |||
* '''Description:''' peptidoglycan deacetylase C <br/><br/> | * '''Description:''' peptidoglycan deacetylase C <br/><br/> | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotT]]'', ''[[yjfA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotT]]'', ''[[yjfA]]'' | ||
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| | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12100 DNA_with_flanks] | ||
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|colspan="2" | '''Genetic context''' <br/> [[Image:yjeA_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yjeA_context.gif]] | ||
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=== Database entries === | === Database entries === | ||
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU12100&redirect=T BSU12100] | |||
* '''DBTBS entry:''' no entry | * '''DBTBS entry:''' no entry | ||
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=== Database entries === | === Database entries === | ||
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU12100&redirect=T BSU12100] | |||
* '''Structure:''' | * '''Structure:''' | ||
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=References= | =References= | ||
<pubmed>17878218,17581128, 22277649</pubmed> | <pubmed>17878218,17581128, 22277649 23199363</pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Latest revision as of 10:25, 2 January 2017
- Description: peptidoglycan deacetylase C
| Gene name | yjeA |
| Synonyms | |
| Essential | no |
| Product | polysaccharide deacetylase C |
| Function | cell wall modification |
| MW, pI | 53 kDa, 9.105 |
| Gene length, protein length | 1401 bp, 467 aa |
| Immediate neighbours | cotT, yjfA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU12100
Phenotypes of a mutant
- sensitive to lysozyme treatment PubMed
Database entries
- BsubCyc: BSU12100
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- deacetylates N-acetylmuramic acid (MurNAc) but not GlcNAc from peptidoglycan PubMed
- Protein family: polysaccharide deacetylase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- K(m)=4.8 mM and k(cat)=0.32 s(-1) (toward B. subtilis peptidoglycan) PubMed
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- BsubCyc: BSU12100
- Structure:
- UniProt: O34798
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
<pubmed>17878218,17581128, 22277649 23199363</pubmed>