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YteR: Difference between revisions

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* '''Description:''' galacturonyl hydrolase, catalyses intracellular degradation of disaccharides generated by [[YesX]] <br/><br/>
{{#bank: YteR}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yteR''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || galacturonyl hydrolase, catalyses intracellular degradation <br/>of disaccharides generated by [[YesX]]
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || intracellular degradation of disaccharides generated by [[YesX]]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 5.87 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1119 bp, 373 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yteS]]'', ''[[yteP]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14990&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yteR_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}
__TOC__
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[utilization of specific carbon sources]]}}
= This gene is a member of the following [[regulons]] =
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU30120
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13843]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' glycosyl hydrolase 105 family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''Interactions:'''
* '''Localization:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2GH4 2GH4],  [http://www.rcsb.org/pdb/explore.do?structureId=2D8L 2D8L] (complex with D-GlcA-Gal-nc)
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34559 O34559]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU30120]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''[[Sigma factor]]:'''
* '''Regulation:''' induced by rhamnogalacturonan {{PubMed|17449691}}
* '''Regulatory mechanism:'''
* '''Additional information:'''  the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>12884008,16870154 ,16781735, 17449691</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:33, 2 April 2014