Jump to content

Easter egg: Difference between revisions

From SubtiWiki
Lflorez (talk | contribs)
No edit summary
No edit summary
 
(11 intermediate revisions by 2 users not shown)
Line 1: Line 1:
* '''Description:''' 4.5 S RNA<br/><br/>


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''scr''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || small cytoplasmic RNA (scRNA, 4.5S RNA),


signal recognition particle-like (SRP) component
[[File:Example.jpg]]
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || presecretory protein translocation
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaJ]]'', ''[[dnaX]]''
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/scr_nucleotide.txt    Gene sequence      (+200bp)  ]'''
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/scr_protein.txt Protein sequence]'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:scr_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}
 
__TOC__
 
<br/><br/><br/><br/><br/><br/>
 
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[protein secretion]]}},
{{SubtiWiki category|[[ncRNA]]}}
 
= This gene is a member of the following [[regulons]] =
 
 
=The gene=
 
=== Basic information ===
 
* '''Locus tag:'''
 
===Phenotypes of a mutant ===
 
=== Database entries ===
 
* '''DBTBS entry:''' no entry
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00095]
 
* '''Structure:'''
 
=== Additional information===
 
 
 
=The RNA=
 
=== Basic information/ Evolution ===
 
* '''Catalyzed reaction/ biological activity:'''
 
=== Extended information on the RNA===
 
* '''Kinetic information'''
 
* '''Interactions:''' [[Scr]]-[[Ffh]]
 
* '''Localization'''
 
=== Database entries ===
 
* '''Structure''':
 
=== Additional information===
 
=Expression and regulation=
 
* '''Operon:''' ''[[yaaJ]]-[[scr]],  [[scr]]''
 
* '''Sigma factor:''' [[SigA]] (both promoters)
 
* '''Regulation:'''
 
* '''Regulatory mechanism:'''
 
* '''Additional information:''' transcribed as 354 nt precursor, cleaved at the 5' end by [[rnc| RNase III]] and at the 3' site by [[rnjA| RNase J1]] to yield a 275 nt molecule, final trimming to 271 nt sc RNA by [[rph| RNase PH]] [http://www.ncbi.nlm.nih.gov/sites/entrez/17576666 PubMed]
 
=Biological materials =
 
* '''Mutant:'''
 
* '''Expression vector:'''
       
* '''lacZ fusion:'''
 
=Labs working on this gene/protein=
 
[[David Bechhofer]], Mount Sinai School, New York, USA [http://www.mountsinai.org/Research/Centers%20Laboratories%20and%20Programs/Bechhofer%20Laboratory?citype=Physician&ciid=Bechhofer%20David%20H%201255565 Homepage]
 
=Your additional remarks=
 
=References=
 
<pubmed>9346318,2468993,17576666, </pubmed>
 
[[Category:small RNA]]

Latest revision as of 16:46, 11 March 2012