Utilization of specific carbon sources: Difference between revisions
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* 2.2.2. [[Utilization of specific carbon sources]] | * 2.2.2. [[Utilization of specific carbon sources]] | ||
|Related= | |Related= | ||
* [[CcpA regulon]] | |||
|}} | |}} | ||
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=== Utilization of organic acids === | === Utilization of organic acids === | ||
* [[acsA]] | * ''[[acsA]]'' | ||
* [[acuA]] | * ''[[acuA]]'' | ||
* [[acuC]] | * ''[[acuC]]'' | ||
* [[cimH]] | * ''[[cimH]]'' | ||
* [[citH]] | * ''[[citH]]'' | ||
* [[citM]] | * ''[[citM]]'' | ||
* [[citS]] | * ''[[citS]]'' | ||
* [[citT]] | * ''[[citT]]'' | ||
* [[dctB]] | * ''[[dctB]]'' | ||
* [[dctP]] | * ''[[dctP]]'' | ||
* [[dctR]] | * ''[[dctR]]'' | ||
* [[dctS]] | * ''[[dctS]]'' | ||
* [[lutA]] | * ''[[hbuT]]'' | ||
* [[lutB]] | * ''[[lutA]]'' | ||
* [[lutC]] | * ''[[lutB]]'' | ||
* [[lutP]] | * ''[[lutC]]'' | ||
* [[lutR]] | * ''[[lutP]]'' | ||
* [[maeA]] | * ''[[lutR]]'' | ||
* [[maeN]] | *'' [[lytS]]'' | ||
* [[malK]] | * ''[[lytT]]'' | ||
* [[malR]] | * ''[[maeA]]'' | ||
* [[malS]] | * ''[[maeN]]'' | ||
* [[mleA]] | * ''[[malK]]'' | ||
* [[mleN]] | * ''[[malR]]'' | ||
* [[yflS]] | * ''[[malS]]'' | ||
* [[yoaB]] | * ''[[mleA]]'' | ||
* [[yraO]] | * ''[[mleN]]'' | ||
* [[ytsJ]] | * ''[[scoA]]'' | ||
* ''[[scoB]]'' | |||
* ''[[ybaR]]'' | |||
* ''[[yflS]]'' | |||
* ''[[yoaB]]'' | |||
* ''[[yraO]]'' | |||
* ''[[ysbA]]'' | |||
* ''[[ytsJ]]'' | |||
* ''[[yxjF]]'' | |||
=== Utilization of acetoin === | === Utilization of acetoin === | ||
* [[acoA]] | * ''[[acoA]]'' | ||
* [[acoB]] | * ''[[acoB]]'' | ||
* [[acoC]] | * ''[[acoC]]'' | ||
* [[acoL]] | * ''[[acoL]]'' | ||
* [[acoR]] | * ''[[acoR]]'' | ||
=== Utilization of glycerol/ glycerol-3-phosphate === | === Utilization of glycerol/ glycerol-3-phosphate === | ||
* [[glpD]] | * ''[[glpD]]'' | ||
* [[glpF]] | * ''[[glpF]]'' | ||
* [[glpK]] | * ''[[glpK]]'' | ||
* [[glpP]] | * ''[[glpP]]'' | ||
* [[glpQ]] | * ''[[glpQ]]'' | ||
* [[glpT]] | * ''[[glpT]]'' | ||
=== Utilization of ribose === | === Utilization of ribose === | ||
* [[rbsA]] | * ''[[rbsA]]'' | ||
* [[rbsB]] | * ''[[rbsB]]'' | ||
* [[rbsC]] | * ''[[rbsC]]'' | ||
* [[rbsD]] | * ''[[rbsD]]'' | ||
* [[rbsK]] | * ''[[rbsK]]'' | ||
* [[rbsR]] | * ''[[rbsR]]'' | ||
=== Utilization of xylan/ xylose === | === Utilization of xylan/ xylose === | ||
* [[xylA]] | * ''[[araE]]'' | ||
* [[xylB]] | * ''[[xylA]]'' | ||
* [[xylR]] | * ''[[xylB]]'' | ||
* [[xynA]] | * ''[[xylR]]'' | ||
* [[xynB]] | * ''[[xynA]]'' | ||
* [[xynP]] | * ''[[xynB]]'' | ||
* ''[[xynP]]'' | |||
=== Utilization of arabinan/ arabinose/ arabitol === | === Utilization of arabinan/ arabinose/ arabitol === | ||
* [[abf2]] | * ''[[abf2]]'' | ||
* [[abfA]] | * ''[[abfA]]'' | ||
* [[abn2]] | * ''[[abn2]]'' | ||
* [[abnA]] | * ''[[abnA]]'' | ||
* [[araA]] | *'' [[araA]]'' | ||
* [[araB]] | * ''[[araB]]'' | ||
* [[araD]] | * ''[[araD]]'' | ||
* [[araE]] | * ''[[araE]]'' | ||
* [[araN]] | * ''[[araN]]'' | ||
* [[araP]] | * ''[[araP]]'' | ||
* [[araQ]] | * ''[[araQ]]'' | ||
* [[araR]] | * ''[[araR]]'' | ||
=== Utilization of fructose === | === Utilization of fructose === | ||
* [[fruA]] | * ''[[fruA]]'' | ||
* [[fruK]] | * ''[[fruK]]'' | ||
* [[fruR]] | * ''[[fruR]]'' | ||
* [[levD]] | * ''[[levD]]'' | ||
* [[levE]] | * ''[[levE]]'' | ||
* [[levF]] | * ''[[levF]]'' | ||
* [[levG]] | * ''[[levG]]'' | ||
* [[levR]] | * ''[[levR]]'' | ||
=== Utilization of galactose === | === Utilization of galactose === | ||
* [[galE]] | * ''[[araE]]'' | ||
* [[galK]] | * ''[[galE]]'' | ||
* [[galM]] | * ''[[galK]]'' | ||
* [[galT]] | * ''[[galM]]'' | ||
* ''[[galT]]'' | |||
=== Utilization of mannose === | === Utilization of mannose === | ||
* [[manA]] | * ''[[manA]]'' | ||
* [[manP]] | * ''[[manP]]'' | ||
* [[manR]] | * ''[[manR]]'' | ||
* [[pmi]] | * ''[[pmi]]'' | ||
=== Utilization of mannitol === | === Utilization of mannitol === | ||
* [[mtlA]] | * ''[[mtlA]]'' | ||
* [[mtlD]] | * ''[[mtlD]]'' | ||
* [[mtlF]] | * ''[[mtlF]]'' | ||
* [[mtlR]] | * ''[[mtlR]]'' | ||
=== Utilization of glucitol === | === Utilization of glucitol === | ||
* [[gutB]] | * ''[[gutB]]'' | ||
* [[gutP]] | * ''[[gutP]]'' | ||
* [[gutR]] | * ''[[gutR]]'' | ||
=== Utilization of gluconate === | === Utilization of gluconate === | ||
* [[gntK]] | * ''[[gntK]]'' | ||
* [[gntP]] | * ''[[gntP]]'' | ||
* [[gntR]] | * ''[[gntR]]'' | ||
* [[gntZ]] | * ''[[gntZ]]'' | ||
=== Utilization of glucarate/galactarate === | === Utilization of glucarate/galactarate === | ||
* [[ycbC]] | * ''[[ycbC]]'' | ||
* [[ycbD]] | * ''[[ycbD]]'' | ||
* [[ycbE]] | * ''[[ycbE]]'' | ||
* [[ycbF]] | * ''[[ycbF]]'' | ||
* [[ycbG]] | * ''[[ycbG]]'' | ||
* [[ycbH]] | *'' [[ycbH]]'' | ||
=== Utilization of hexuronate === | === Utilization of hexuronate === | ||
* [[exuR]] | * ''[[exuR]]'' | ||
* [[exuT]] | * ''[[exuT]]'' | ||
* [[kdgA]] | * ''[[kdgA]]'' | ||
* [[kdgK]] | * ''[[kdgK]]'' | ||
* [[kdgR]] | * ''[[kdgR]]'' | ||
* [[kdgT]] | * ''[[kdgT]]'' | ||
* [[kduD]] | * ''[[kduD]]'' | ||
* [[kduI]] | * ''[[kduI]]'' | ||
* [[uxaA]] | * ''[[uxaA]]'' | ||
* [[uxaB]] | * ''[[uxaB]]'' | ||
* [[uxaC]] | * ''[[uxaC]]'' | ||
* [[uxuA]] | * ''[[uxuA]]'' | ||
* [[yjmB]] | * ''[[yjmB]]'' | ||
* [[yjmC]] | * ''[[yjmC]]'' | ||
* [[yjmD]] | * ''[[yjmD]]'' | ||
* [[yjmF]] | * ''[[yjmF]]'' | ||
=== Utilization of inositol === | === Utilization of inositol === | ||
* [[iolA]] | * ''[[iolA]]'' | ||
* [[iolB]] | * ''[[iolB]]'' | ||
* [[iolC]] | * ''[[iolC]]'' | ||
* [[iolD]] | * ''[[iolD]]'' | ||
* [[iolE]] | * ''[[iolE]]'' | ||
* [[iolF]] | * ''[[iolF]]'' | ||
* [[iolG]] | * ''[[iolG]]'' | ||
* [[iolH]] | * ''[[iolH]]'' | ||
* [[iolI]] | * ''[[iolI]]'' | ||
* [[iolJ]] | * ''[[iolJ]]'' | ||
* [[iolR]] | * ''[[iolR]]'' | ||
* [[iolS]] | * ''[[iolS]]'' | ||
* [[iolT]] | * ''[[iolT]]'' | ||
* [[iolW]] | * ''[[iolW]]'' | ||
* [[iolX]] | * ''[[iolX]]'' | ||
* ''[[yfiG]]'' | |||
=== Utilization of amino sugars === | === Utilization of amino sugars === | ||
* [[ | * ''[[frlB]]'' | ||
* [[ | * ''[[frlD]]'' | ||
* [[ | * ''[[frlM]]'' | ||
* [[ | * ''[[frlN]]'' | ||
* [[ | *'' [[frlO]]'' | ||
* [[ | * ''[[frlR]]'' | ||
* [[ | * ''[[gamA]]'' | ||
* [[ | * ''[[gamP]]'' | ||
* [[ | * ''[[gamR]]'' | ||
* [[ | * ''[[murP]]'' | ||
* [[ | * ''[[murQ]]'' | ||
* [[ | * ''[[murR]]'' | ||
* [[ | * ''[[nagA]]'' | ||
* [[ | * ''[[nagB]]'' | ||
* [[ | * ''[[nagP]]'' | ||
* [[ | * ''[[nagR]]'' | ||
* [[ | * ''[[yurJ]]'' | ||
=== Utilization of beta-glucosides === | === Utilization of beta-glucosides === | ||
* [[bglA]] | * ''[[bglA]]'' | ||
* [[bglH]] | * ''[[bglH]]'' | ||
* [[bglP]] | * ''[[bglP]]'' | ||
* [[licT]] | * ''[[licT]]'' | ||
* [[yckE]] | * ''[[yckE]]'' | ||
=== Utilization of sucrose === | === Utilization of sucrose === | ||
* [[fruC]] | * ''[[fruC]]'' | ||
* [[sacA]] | * ''[[sacA]]'' | ||
* [[sacB]] | * ''[[sacB]]'' | ||
* [[sacP]] | * ''[[sacP]]'' | ||
* [[sacT]] | * ''[[sacT]]'' | ||
* [[sacX]] | * ''[[sacX]]'' | ||
* [[sacY]] | * ''[[sacY]]'' | ||
=== Utilization of trehalose === | === Utilization of trehalose === | ||
* [[glcK]] | * ''[[glcK]]'' | ||
* [[treA]] | * ''[[treA]]'' | ||
* [[treP]] | * ''[[treP]]'' | ||
* [[treR]] | * ''[[treR]]'' | ||
=== Utilization of melibiose === | === Utilization of melibiose === | ||
* [[amyC]] | * ''[[amyC]]'' | ||
* [[amyD]] | * ''[[amyD]]'' | ||
* [[melA]] | * ''[[melA]]'' | ||
* [[msmE]] | * ''[[msmE]]'' | ||
* [[msmR]] | * ''[[msmR]]'' | ||
* [[msmX]] | * ''[[msmX]]'' | ||
=== Utilization of maltose === | === Utilization of maltose === | ||
* [[glcK]] | * ''[[glcK]]'' | ||
* [[glvR]] | *'' [[glvR]]'' | ||
* [[malA]] | * ''[[malA]]'' | ||
* [[malP]] | * ''[[malP]]'' | ||
* [[yvdK]] | * ''[[yvdK]]'' | ||
=== Utilization of starch/ maltodextrin === | === Utilization of starch/ maltodextrin === | ||
* [[amyE]] | * ''[[amyE]]'' | ||
* [[amyX]] | * ''[[amyX]]'' | ||
* [[glcK]] | * ''[[glcK]]'' | ||
* [[maa]] | * ''[[maa]]'' | ||
* [[malL]] | * ''[[malL]]'' | ||
* [[mdxE]] | * ''[[mdxE]]'' | ||
* [[mdxF]] | * ''[[mdxF]]'' | ||
* [[mdxG]] | * ''[[mdxG]]'' | ||
* [[msmX]] | * ''[[msmX]]'' | ||
* [[pgcM]] | * ''[[pgcM]]'' | ||
* [[yvdE]] | * ''[[yvdE]]'' | ||
* [[yvdF]] | * ''[[yvdF]]'' | ||
=== Utilization of glucomannan === | === Utilization of glucomannan === | ||
* [[gmuA]] | * ''[[gmuA]]'' | ||
* [[gmuB]] | * ''[[gmuB]]'' | ||
* [[gmuC]] | * ''[[gmuC]]'' | ||
* [[gmuD]] | * ''[[gmuD]]'' | ||
* [[gmuE]] | * ''[[gmuE]]'' | ||
* [[gmuF]] | * ''[[gmuF]]'' | ||
* [[gmuG]] | * ''[[gmuG]]'' | ||
* [[gmuR]] | * ''[[gmuR]]'' | ||
=== Utilization of rhamnose and pectin === | |||
* ''[[lplD]]'' | |||
* ''[[rhaA]]'' | |||
* ''[[rhaB]]'' | |||
* ''[[rhaEW]]'' | |||
* ''[[rhaM]]'' | |||
* ''[[rhaR]]'' | |||
* ''[[rhiF]]'' | |||
* ''[[rhiG]]'' | |||
* ''[[rhiL]]'' | |||
* ''[[rhiN]]'' | |||
* ''[[rhgR]]'' | |||
* ''[[ybcM]]'' | |||
* ''[[yesT]]'' | |||
* ''[[yesV]]'' | |||
* ''[[yesW]]'' | |||
* ''[[yesX]]'' | |||
* ''[[yesY]]'' | |||
* ''[[yesZ]]'' | |||
* ''[[yteR]]'' | |||
=== Utilization of | === Utilization of galactan === | ||
* [[ | * ''[[cycB]]'' | ||
* [[ | * ''[[ganA]]'' | ||
* [[ | * ''[[ganB]]'' | ||
* [[ | *'' [[ganP]]'' | ||
* [[ | * ''[[ganQ]]'' | ||
* [[ | * ''[[lacR]]'' | ||
=== Utilization of other polymeric carbohydrates === | === Utilization of other polymeric carbohydrates === | ||
* [[bglC]] | * ''[[bglC]]'' | ||
* [[bglS]] | * ''[[bglS]]'' | ||
* [[csn]] | * ''[[csn]]'' | ||
* | * ''[[levB]]'' | ||
* ''[[levD]]'' | |||
* ''[[levE]]'' | |||
* ''[[levF]]'' | |||
* [[levD]] | * ''[[levG]]'' | ||
* [[levE]] | * ''[[levR]]'' | ||
* [[levF]] | * ''[[licA]]'' | ||
* [[levG]] | * ''[[licB]]'' | ||
* [[levR]] | * ''[[licC]]'' | ||
* [[licA]] | * ''[[licH]]'' | ||
* [[licB]] | * ''[[licR]]'' | ||
* [[licC]] | * ''[[licT]]'' | ||
* [[licH]] | * ''[[pel]]'' | ||
* [[licR]] | * ''[[pelB]]'' | ||
* [[licT]] | * ''[[pelC]]'' | ||
* [[pel]] | * ''[[sacC]]'' | ||
* [[pelB]] | * ''[[senS]]'' | ||
* [[pelC]] | * ''[[xynC]]'' | ||
* [[sacC]] | * ''[[xynD]]'' | ||
* [[senS]] | * ''[[ysdC]]'' | ||
* [[xynC]] | * ''[[ytoP]]'' | ||
* [[xynD]] | * ''[[yugT]]'' | ||
* [[ysdC]] | |||
* [[ytoP]] | === Utilization of other pentoses and hexoses=== | ||
* [[yugT]] | * ''[[ydaE]]'' | ||
* [[ | |||
== Utilization of specific carbon sources in [http://subtiwiki.uni-goettingen.de/subtipathways.html ''Subti''Pathways]: [http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Utilization of different carbon sources]== | |||
==Reviews== | ==Reviews== | ||
<pubmed> 11018147 19202299 17982469 </pubmed> | <pubmed> 11018147 19202299 17982469 </pubmed> | ||
=Back to [[categories]]= | |||
Latest revision as of 16:52, 26 September 2016
| Parent categories |
|
| Neighbouring categories |
|
| Related categories | |
Genes in this functional category
Utilization of organic acids
- acsA
- acuA
- acuC
- cimH
- citH
- citM
- citS
- citT
- dctB
- dctP
- dctR
- dctS
- hbuT
- lutA
- lutB
- lutC
- lutP
- lutR
- lytS
- lytT
- maeA
- maeN
- malK
- malR
- malS
- mleA
- mleN
- scoA
- scoB
- ybaR
- yflS
- yoaB
- yraO
- ysbA
- ytsJ
- yxjF
Utilization of acetoin
Utilization of glycerol/ glycerol-3-phosphate
Utilization of ribose
Utilization of xylan/ xylose
Utilization of arabinan/ arabinose/ arabitol
Utilization of fructose
Utilization of galactose
Utilization of mannose
Utilization of mannitol
Utilization of glucitol
Utilization of gluconate
Utilization of glucarate/galactarate
Utilization of hexuronate
Utilization of inositol
Utilization of amino sugars
Utilization of beta-glucosides
Utilization of sucrose
Utilization of trehalose
Utilization of melibiose
Utilization of maltose
Utilization of starch/ maltodextrin
Utilization of glucomannan
Utilization of rhamnose and pectin
Utilization of galactan
Utilization of other polymeric carbohydrates
- bglC
- bglS
- csn
- levB
- levD
- levE
- levF
- levG
- levR
- licA
- licB
- licC
- licH
- licR
- licT
- pel
- pelB
- pelC
- sacC
- senS
- xynC
- xynD
- ysdC
- ytoP
- yugT
Utilization of other pentoses and hexoses
Utilization of specific carbon sources in SubtiPathways: Utilization of different carbon sources
Reviews
<pubmed> 11018147 19202299 17982469 </pubmed>