|
|
| (22 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| * '''Description:''' general stress protein, similar to DNA-3-methyladenine glycosidase II <br/><br/>
| |
|
| |
|
| {| align="right" border="1" cellpadding="2"
| |
| |-
| |
| |style="background:#ABCDEF;" align="center"|'''Gene name'''
| |
| |''aag''
| |
| |-
| |
| |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yxlJ ''
| |
| |-
| |
| |style="background:#ABCDEF;" align="center"| '''Essential''' || no
| |
| |-
| |
| |style="background:#ABCDEF;" align="center"| '''Product''' || unknown
| |
| |-
| |
| |style="background:#ABCDEF;" align="center"|'''Function''' || survival of salt and ethanol stresses
| |
| |-
| |
| |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 6.117
| |
| |-
| |
| |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 588 bp, 196 aa
| |
| |-
| |
| |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxzF]]'', ''[[katX]]''
| |
| |-
| |
| |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB15888]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
| |
| |-
| |
| |colspan="2" | '''Genetic context''' <br/> [[Image:yxlJ_context.gif]]
| |
| <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
| |
| |-
| |
| |}
| |
|
| |
|
| __TOC__
| | [[File:Example.jpg]] |
| | |
| <br/><br/><br/><br/>
| |
| | |
| =The gene=
| |
| | |
| === Basic information ===
| |
| | |
| * '''Locus tag:''' BSU38620
| |
| | |
| ===Phenotypes of a mutant ===
| |
| | |
| === Database entries ===
| |
| | |
| * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxlJ-yxzF.html]
| |
| | |
| * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12555]
| |
| | |
| === Additional information===
| |
| | |
| | |
| | |
| = Categories containing this gene/protein =
| |
| {{SubtiWiki category|[[DNA repair/ recombination/ based on similarity]]}},
| |
| {{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}}
| |
| =The protein=
| |
| | |
| === Basic information/ Evolution ===
| |
| | |
| * '''Catalyzed reaction/ biological activity:''' removes hypoxanthine, 3-alkylated purines, and 1,N6-ethenoadenine from DNA; hypoxanthine and 1,N6-ethenoadenine are the preferred substrates [http://www.ncbi.nlm.nih.gov/sites/entrez/14729667 PubMed]
| |
| | |
| * '''Protein family:''' DNA glycosylase MPG family (according to Swiss-Prot) AAG family of 3-methyladenine DNA glycosylases
| |
| | |
| * '''Paralogous protein(s):'''
| |
| | |
| === Extended information on the protein ===
| |
| | |
| * '''Kinetic information:'''
| |
| | |
| * '''Domains:'''
| |
| | |
| * '''Modification:'''
| |
| | |
| * '''Cofactor(s):'''
| |
| | |
| * '''Effectors of protein activity:'''
| |
| | |
| * '''Interactions:'''
| |
| | |
| * '''Localization:'''
| |
| | |
| === Database entries ===
| |
| | |
| * '''Structure:'''
| |
| | |
| * '''UniProt:''' [http://www.uniprot.org/uniprot/P94378 P94378]
| |
| | |
| * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU38620]
| |
| | |
| * '''E.C. number:'''
| |
| | |
| === Additional information===
| |
| | |
| =Expression and regulation=
| |
| * '''Operon:''' ''[[aag]]-[[yxzF]]'' {{PubMed|8990303}}
| |
| | |
| * '''[[Sigma factor]]:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed]
| |
| | |
| * '''Regulation:'''
| |
| ** induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed]
| |
| | |
| * '''Regulatory mechanism:'''
| |
| | |
| * '''Additional information:'''
| |
| | |
| =Biological materials =
| |
| | |
| * '''Mutant:'''
| |
| | |
| * '''Expression vector:'''
| |
|
| |
| * '''lacZ fusion:'''
| |
| | |
| * '''GFP fusion:'''
| |
| | |
| * '''two-hybrid system:'''
| |
| | |
| * '''Antibody:'''
| |
| | |
| =Labs working on this gene/protein=
| |
| | |
| =Your additional remarks=
| |
| | |
| =References=
| |
| | |
| <pubmed>15805528 14729667, </pubmed>
| |
| | |
| [[Category:Protein-coding genes]]
| |
