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| | {{#bank: YtrF}} |
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| ----
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| =[http://ukusypumi.co.cc UNDER COSTRUCTION, PLEASE SEE THIS POST IN RESERVE COPY]=
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| =[http://ukusypumi.co.cc CLICK HERE]=
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| </div>
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| * '''Description:''' acetoin [[ABC transporter]] (substrate-binding lipoprotein) <br/><br/>
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| {| align="right" border="1" cellpadding="2"
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| |-
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| |style="background:#ABCDEF;" align="center"|'''Gene name'''
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| |''ytrF''
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| |-
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| |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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| |-
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| |style="background:#ABCDEF;" align="center"| '''Essential''' || no
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| |-
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| |style="background:#ABCDEF;" align="center"| '''Product''' || acetoin [[ABC transporter]] (substrate-binding lipoprotein)
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| |-
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| |style="background:#ABCDEF;" align="center"|'''Function''' || uptake of acetoin
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| |-
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| |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''
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| |-
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| |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 8.292
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| |-
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| |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1308 bp, 436 aa
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| |-
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| |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bceR]]'', ''[[ytrE]]''
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| |-
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| |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15019&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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| |-
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| |colspan="2" | '''Genetic context''' <br/> [[Image:ytrF_context.gif]]
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| <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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| |-
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| |}
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| __TOC__
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| <br/><br/><br/><br/><br/><br/>
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|
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| =The gene=
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|
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| === Basic information ===
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| * '''Locus tag:''' BSU30410
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|
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| ===Phenotypes of a mutant ===
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| === Database entries ===
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| * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ytrABCDEF.html]
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| * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13916]
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| === Additional information===
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|
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| =The protein=
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|
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| === Basic information/ Evolution ===
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| * '''Catalyzed reaction/ biological activity:'''
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| * '''Protein family:''' ABC-4 integral membrane protein family (according to Swiss-Prot)
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| * '''Paralogous protein(s):'''
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| === Extended information on the protein ===
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| * '''Kinetic information:'''
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| * '''Domains:'''
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| * '''Modification:'''
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| * '''Cofactor(s):'''
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| * '''Effectors of protein activity:'''
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| * '''Interactions:''' ([[YtrB]]-[[YtrE]])-([[YtrC]]-[[YtrD]])-[[YtrF]] {{PubMed|10986249}}
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| * '''Localization:''' cell membrane (via [[YtrC]]-[[YtrD]]) {{PubMed|10986249}}
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|
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| === Database entries ===
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| * '''Structure:'''
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| * '''UniProt:''' [http://www.uniprot.org/uniprot/O35005 O35005]
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| * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU30410]
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| * '''E.C. number:'''
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| === Additional information===
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| =Expression and regulation=
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| * '''Operon:''' ''[[ytrA]]-[[ytrB]]-[[ytrC]]-[[ytrD]]-[[ytrE]]-[[ytrF]]'' {{PubMed|10986249}}
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| * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|10986249}}
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| * '''Regulation:'''
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| ** expressed early in the stationary phase {{PubMed|10986249}}
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| ** induced by cold shock (7.5-fold) {{PubMed|12399512}}
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| * '''Regulatory mechanism:'''
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| ** [[YtrA]]: transcription repression {{PubMed|10986249}}
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| * '''Additional information:'''
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| =Biological materials =
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| * '''Mutant:'''
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| * '''Expression vector:'''
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| * '''lacZ fusion:'''
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| * '''GFP fusion:'''
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| * '''two-hybrid system:'''
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| * '''Antibody:'''
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| =Labs working on this gene/protein=
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| =Your additional remarks=
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| =References=
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| <pubmed>10986249,10092453, 12399512</pubmed>
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| [[Category:Protein-coding genes]]
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